GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000928-TA|BGIBMGA000928-PA|IPR001478|PDZ/DHR/GLGF
         (535 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   8.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   8.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   8.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   8.4  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 350 KSVKEFVTNPSNKTIINLTEDGATIQCSY 378
           ++++ F  NP   T+I L+  GA++   Y
Sbjct: 191 ENIEWFGGNPKRITLIGLSAGGASVHYHY 219


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 350 KSVKEFVTNPSNKTIINLTEDGATIQCSY 378
           ++++ F  NP   T+I L+  GA++   Y
Sbjct: 62  ENIEWFGGNPKRITLIGLSAGGASVHYHY 90


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 354 EFVTNPSNKTIINLTEDGATIQCSYDSNQSP 384
           +++ +PSN  +  L  +  TI C     Q P
Sbjct: 857 KYMVSPSNDALFVLNGETRTINCEIGGLQHP 887


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 350 KSVKEFVTNPSNKTIINLTEDGATIQCSY 378
           ++++ F  NP   T+I L+  GA++   Y
Sbjct: 191 ENIEWFGGNPKRITLIGLSAGGASVHYHY 219


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,365
Number of Sequences: 429
Number of extensions: 5078
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 4
length of query: 535
length of database: 140,377
effective HSP length: 61
effective length of query: 474
effective length of database: 114,208
effective search space: 54134592
effective search space used: 54134592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)