GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000927-TA|BGIBMGA000927-
PA|IPR000175|Sodium:neurotransmitter symporter
         (632 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    29   0.13 
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    29   0.13 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    24   2.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   8.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   8.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   8.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   8.4  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 0.13
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 255 VYFTALFPYVVLVILFFRGVTLPGAITGILFYLTPDFSQL 294
           +Y T+L+ + +L  + F GVT P  +  +L + T  F+ L
Sbjct: 44  IYLTSLYIWFILTQMTFSGVTSPTIMKFVLSFRTGSFTFL 83


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 0.13
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 255 VYFTALFPYVVLVILFFRGVTLPGAITGILFYLTPDFSQL 294
           +Y T+L+ + +L  + F GVT P  +  +L + T  F+ L
Sbjct: 44  IYLTSLYIWFILTQMTFSGVTSPTIMKFVLSFRTGSFTFL 83


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 233 LLAAWVIVFLCLCKGVQSSGKVVYFTALFPYVVLVILFF 271
           +LAA VI F  +  G+ +S   V+F    P  V  +L F
Sbjct: 146 VLAASVIFFDVVVWGLSASDLGVFFKRFLPVYVSYLLIF 184


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 192 TALAKTALRRPPAEEYFTNQVLGLSSG--IEETGEIRLGMAMCLLAA-WVIVFLCLCKGV 248
           T L  T+  +P     F N+ LG      ++     R+    CL+ A WV     L +  
Sbjct: 92  TLLFMTSQLKPDKVTVFCNRDLGREKQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFR-- 149

Query: 249 QSSGKVVYFTALFP-YVVLVILFFRGVTLPGAITGILFYLTPDFSQLANAQV 299
            SS    + ++  P +   +I+FF        I  ++FY+ PD   +  A +
Sbjct: 150 -SSRMCFFKSSKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAML 200


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 192 TALAKTALRRPPAEEYFTNQVLGLSSG--IEETGEIRLGMAMCLLAA-WVIVFLCLCKGV 248
           T L  T+  +P     F N+ LG      ++     R+    CL+ A WV     L +  
Sbjct: 92  TLLFMTSQLKPDKVTVFCNRDLGREKQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFR-- 149

Query: 249 QSSGKVVYFTALFP-YVVLVILFFRGVTLPGAITGILFYLTPDFSQLANAQV 299
            SS    + ++  P +   +I+FF        I  ++FY+ PD   +  A +
Sbjct: 150 -SSRMCFFKSSKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAML 200


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 192 TALAKTALRRPPAEEYFTNQVLGLSSG--IEETGEIRLGMAMCLLAA-WVIVFLCLCKGV 248
           T L  T+  +P     F N+ LG      ++     R+    CL+ A WV     L +  
Sbjct: 92  TLLFMTSQLKPDKVTVFCNRDLGREKQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFR-- 149

Query: 249 QSSGKVVYFTALFP-YVVLVILFFRGVTLPGAITGILFYLTPDFSQLANAQV 299
            SS    + ++  P +   +I+FF        I  ++FY+ PD   +  A +
Sbjct: 150 -SSRMCFFKSSKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAML 200


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 192 TALAKTALRRPPAEEYFTNQVLGLSSG--IEETGEIRLGMAMCLLAA-WVIVFLCLCKGV 248
           T L  T+  +P     F N+ LG      ++     R+    CL+ A WV     L +  
Sbjct: 92  TLLFMTSQLKPDKVTVFCNRDLGREKQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFR-- 149

Query: 249 QSSGKVVYFTALFP-YVVLVILFFRGVTLPGAITGILFYLTPDFSQLANAQV 299
            SS    + ++  P +   +I+FF        I  ++FY+ PD   +  A +
Sbjct: 150 -SSRMCFFKSSKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAML 200


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.141    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,293
Number of Sequences: 317
Number of extensions: 6368
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 7
length of query: 632
length of database: 114,650
effective HSP length: 61
effective length of query: 571
effective length of database: 95,313
effective search space: 54423723
effective search space used: 54423723
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)