GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000927-TA|BGIBMGA000927-
PA|IPR000175|Sodium:neurotransmitter symporter
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         28   3.4  
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    27   7.9  

>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 113 VIVSSIVMLYYNLIIAWTIFYMTVSFSSIFYQLPWQNCKAE 153
           +++++I++ ++N    W +F+  + F  I YQL ++N  +E
Sbjct: 26  LLITTILLCFFNATTYWKLFFGAM-FDFIHYQLLFRNSLSE 65


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 318 LITLSSYNKFSNNCYIDSLIVAVSNIATSFFAGLVIFSVIGFLAHELNVSVDRV 371
           +  L+   K ++ C++D+L+      A+S    L + S+IG    +L  +V +V
Sbjct: 195 IAVLAKMGKRTHLCFVDTLLHGTGEHASSVIRDLTVESIIGESNKQLLKNVAKV 248


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.141    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,344
Number of Sequences: 5004
Number of extensions: 111568
Number of successful extensions: 302
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 2
length of query: 632
length of database: 2,362,478
effective HSP length: 77
effective length of query: 555
effective length of database: 1,977,170
effective search space: 1097329350
effective search space used: 1097329350
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)