Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000927-TA|BGIBMGA000927-
PA|IPR000175|Sodium:neurotransmitter symporter
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0626 + 4596022-4596462,4596549-4596667,4596745-4596801,459... 37 0.056
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 35 0.17
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 33 0.91
03_05_0703 - 26942117-26942221,26943765-26945579 31 2.8
01_06_0567 - 30297609-30297836,30298646-30298798 30 4.9
05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419... 29 8.5
04_01_0067 - 673381-673387,675388-678131 29 8.5
>03_01_0626 +
4596022-4596462,4596549-4596667,4596745-4596801,
4596921-4597159,4597261-4597379,4597488-4597574,
4597673-4597720
Length = 369
Score = 36.7 bits (81), Expect = 0.056
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 333 IDSLIVAVSNIATSFFAGLVIFSVIGF-LAHELNVSVDRVVDQGAGLAFIVYPEVVTRLP 391
+D+L + ++ A L F+ G +A+EL G G F VT L
Sbjct: 181 VDALSICMTINAWELMIPLAFFAGTGVRVANELGAG------NGKGARFATIVSSVTSLV 234
Query: 392 ISPLWSILFFVMLLTLGLDSQFALMETVTTAILDRFPNFRQKKGWVVFIVAVFGYLGGLI 451
I LFF +L+ +GL +FAL+ T + +LD N + + + ++ L G+
Sbjct: 235 IG-----LFFWVLI-VGLHDKFALIFTSSDVVLDAVDNLSVLLAFTILLNSIQPVLSGV- 287
Query: 452 FTTNSGMYWLQLMDKYAANWSVLIIAIGECILIAWIY 488
SG W Q M Y + +I I IL+ W++
Sbjct: 288 -AVGSG--W-QSMVAYVNIGTYYLIGIPMGILLGWLF 320
>12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 35.1 bits (77), Expect = 0.17
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 63 AFLIPFTVMLVIAGLPLMFMELSFGQYAALGPVAVYNKFCPLFRGLGYGMVIVSSIVMLY 122
A IP+ +ML + + + + + + AA Y FC L + +GM+IVS L
Sbjct: 1150 AMEIPYVLMLALLFMLIAYPTIGYAWTAAKFCWFFYTMFCTLLYFVYFGMLIVSITPNLQ 1209
Query: 123 YNLIIAWTIFYMTVSFSSIFYQLPWQ 148
I A + FYMT S F P Q
Sbjct: 1210 VASIYA-SSFYMTQHLLSGFVMPPSQ 1234
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 32.7 bits (71), Expect = 0.91
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 80 MFMELSFGQYAALGPVAVYNKFCPLFRGLGYGMVIVSSIVMLYYNLIIAWTIFYMTVSFS 139
+F E +AL + +N + F L Y + + M YY W I Y ++ +
Sbjct: 121 VFQEPISAALSALSLLVQFNGWLSFFLLLSYKLPLRPETQMTYYEYTGLWHI-YGLLAMN 179
Query: 140 SIFYQLPWQNCKAEWSTKHCYS 161
+ F++ + +C W+ K YS
Sbjct: 180 AWFWRAIYHSCDTVWTEKLYYS 201
>03_05_0703 - 26942117-26942221,26943765-26945579
Length = 639
Score = 31.1 bits (67), Expect = 2.8
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 381 IVYPEVVTRLPISPLWSILFFVMLLTLGLDSQ-FALMETVTTAILDRFPNFRQKKGWVVF 439
++Y V R P P+W + ++ +G +SQ FA + TA+ NF + +G V+
Sbjct: 109 MIYLAVSGRTPRPPVWLMCLYI---AVGANSQSFANTGALVTAV----KNFPEDRGVVLG 161
Query: 440 IVAVFGYLGGLIFT 453
++ F L G IFT
Sbjct: 162 LLKGFVGLSGAIFT 175
>01_06_0567 - 30297609-30297836,30298646-30298798
Length = 126
Score = 30.3 bits (65), Expect = 4.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 253 KVVYFTALFPYVVLVILFFRGVTLPGAITGILFYLTPDF 291
K+ L Y+VLVI+ F+G++ A G ++TP +
Sbjct: 52 KISMVIILAVYIVLVIICFKGMSSVWAAVGTTIFITPSY 90
>05_01_0502 +
4191443-4191769,4191770-4191892,4194161-4194313,
4194420-4194505,4194648-4194732,4194871-4194990,
4195066-4195134,4195351-4195506
Length = 372
Score = 29.5 bits (63), Expect = 8.5
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 52 FPYLC--YNNGGGAFLIPFTVMLVIAGLPLMFMELSFGQYAALGPVAVYNKFCPLFRGLG 109
FPY + G+F I +L + P LS GQYA + P+A+ + +F +
Sbjct: 116 FPYTITTFQFASGSFFITLMWLLNLHPKP----RLSLGQYAKILPLALVHTMGNVFTNMS 171
Query: 110 YGMVIVS 116
G V VS
Sbjct: 172 LGKVAVS 178
>04_01_0067 - 673381-673387,675388-678131
Length = 916
Score = 29.5 bits (63), Expect = 8.5
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 447 LGGLIFTTNSGMYWLQLMDKYAANWSVL-IIAIGECILIAWIYGAEKFCGDIQRMIGRQS 505
LGGL+ T S W+ ++DK S+L ++ + L + FC R
Sbjct: 400 LGGLLGATKSTKTWMNVLDKELYGDSILPVLELSYSYLPRRLKQCFSFCSLFPRNYKFNK 459
Query: 506 KLWVYLWSA 514
++ + LW A
Sbjct: 460 RVLIQLWMA 468
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.327 0.141 0.455
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,330,127
Number of Sequences: 37544
Number of extensions: 724917
Number of successful extensions: 1832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1830
Number of HSP's gapped (non-prelim): 8
length of query: 632
length of database: 14,793,348
effective HSP length: 86
effective length of query: 546
effective length of database: 11,564,564
effective search space: 6314251944
effective search space used: 6314251944
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 63 (29.5 bits)
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