GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000927-TA|BGIBMGA000927-
PA|IPR000175|Sodium:neurotransmitter symporter
         (632 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...   460   e-131
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...   460   e-131
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...   173   3e-45

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score =  460 bits (1135), Expect = e-131
 Identities = 226/535 (42%), Positives = 317/535 (59%), Gaps = 22/535 (4%)

Query: 24  PERGNWTGRFDFXXXXXXXXXXXXNVWRFPYLCYNNGGGAFLIPFTVMLVIAGLPLMFME 83
           P+RG W+ + +F            N+WRFPYLCY NGGGAF++P+ + L +AG+P+  ME
Sbjct: 70  PDRGMWSSKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIALALAGVPMFLME 129

Query: 84  LSFGQYAALGPVAVYNKFCPLFRGLGYGMVIVSSIVMLYYNLIIAWTIFYMTVSFSSIFY 143
           LS GQ   +G + V+ K  P+F+G+GY   ++S    +YY +I+AW +FY+ VS      
Sbjct: 130 LSLGQMMTIGGLGVF-KIAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLR---I 185

Query: 144 QLPWQNCKAEWSTKHCYSYEEADE--CEAQNGTYYLRQCFNQSYSVSHNITALAKTALRR 201
            LPW+ C   W+T++C +  E  E  C  Q+       C     ++SH        AL +
Sbjct: 186 DLPWRTCGNPWNTRYCLTPTERLEALCWTQDEDII---CSTPIGNLSH--------ALLK 234

Query: 202 PPAEEYFTNQVLGLSSGIEETGEIRLGMAMCLLAAWVIVFLCLCKGVQSSGKVVYFTALF 261
            P +E++  + L +S GIE  G IR  +A  L   W++ + C+ KGV+ +GKVVYFT+LF
Sbjct: 235 DPVKEFWERRTLQISDGIENIGSIRWELAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLF 294

Query: 262 PYVVLVILFFRGVTLPGAITGILFYLTPDFSQLANAQVWGDAAVQIFFALSPAWGGLITL 321
           PY +L IL  RG+TLPGA+ G+ +Y+TP+ S+L++ +VW DA  QIFF+ +   G L+ L
Sbjct: 295 PYALLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVAL 354

Query: 322 SSYNKFSNNCYIDSLIVAVSNIATSFFAGLVIFSVIGFLAHELNVSVDRVVDQGAGLAFI 381
            SYNKF+NN Y D+LIV   N  TS  +G+VIFSV+GF+AHE    V  V   G GLAF+
Sbjct: 355 GSYNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGLAFL 414

Query: 382 VYPEVVTRLPISPLWSILFFVMLLTLGLDSQFALMETVTTAILDRFPN-FRQKKGWVVFI 440
           VYP  V  LP S +WS LFF ML+ +GLDSQF  +E   TA +D +P   R++K   + I
Sbjct: 415 VYPSAVLELPGSSIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFIAI 474

Query: 441 VAVFGYLGGLIFTTNSGMYWLQLMDKYA-ANWSVLIIAIGECILIAWIYGAEKFCGDIQR 499
           V    YL GL   T  GMY  QL+D YA + + +L +   ECI I+W +G  +F   I+ 
Sbjct: 475 VCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRD 534

Query: 500 MIGRQSKLWVYLWSAMWRIITPAALVFILVFNWIEYKPASYGHYVYPMWADAVGW 554
           MIG     W   W   W I TPA  V +  FN I++ P  Y  Y YP W+  +GW
Sbjct: 535 MIGYYPCCW---WKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGW 586


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score =  460 bits (1134), Expect = e-131
 Identities = 226/535 (42%), Positives = 317/535 (59%), Gaps = 22/535 (4%)

Query: 24  PERGNWTGRFDFXXXXXXXXXXXXNVWRFPYLCYNNGGGAFLIPFTVMLVIAGLPLMFME 83
           P+RG W+ + +F            N+WRFPYLCY NGGGAF++P+ + L +AG+P+  ME
Sbjct: 17  PDRGMWSSKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIALALAGVPMFLME 76

Query: 84  LSFGQYAALGPVAVYNKFCPLFRGLGYGMVIVSSIVMLYYNLIIAWTIFYMTVSFSSIFY 143
           LS GQ   +G + V+ K  P+F+G+GY   ++S    +YY +I+AW +FY+ VS      
Sbjct: 77  LSLGQMMTIGGLGVF-KIAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLR---I 132

Query: 144 QLPWQNCKAEWSTKHCYSYEEADE--CEAQNGTYYLRQCFNQSYSVSHNITALAKTALRR 201
            LPW+ C   W+T++C +  E  E  C  Q+       C     ++SH        AL +
Sbjct: 133 DLPWRTCGNPWNTRYCLTPTERLEALCWTQDEDVI---CSTPIGNLSH--------ALLK 181

Query: 202 PPAEEYFTNQVLGLSSGIEETGEIRLGMAMCLLAAWVIVFLCLCKGVQSSGKVVYFTALF 261
            P +E++  + L +S GIE  G IR  +A  L   W++ + C+ KGV+ +GKVVYFT+LF
Sbjct: 182 DPVKEFWERRTLQISDGIENIGSIRWELAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLF 241

Query: 262 PYVVLVILFFRGVTLPGAITGILFYLTPDFSQLANAQVWGDAAVQIFFALSPAWGGLITL 321
           PY +L IL  RG+TLPGA+ G+ +Y+TP+ S+L++ +VW DA  QIFF+ +   G L+ L
Sbjct: 242 PYALLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVAL 301

Query: 322 SSYNKFSNNCYIDSLIVAVSNIATSFFAGLVIFSVIGFLAHELNVSVDRVVDQGAGLAFI 381
            SYNKF+NN Y D+LIV   N  TS  +G+VIFSV+GF+AHE    V  V   G GLAF+
Sbjct: 302 GSYNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPGLAFL 361

Query: 382 VYPEVVTRLPISPLWSILFFVMLLTLGLDSQFALMETVTTAILDRFPN-FRQKKGWVVFI 440
           VYP  V  LP S +WS LFF ML+ +GLDSQF  +E   TA +D +P   R++K   + I
Sbjct: 362 VYPSAVLELPGSSIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFIAI 421

Query: 441 VAVFGYLGGLIFTTNSGMYWLQLMDKYA-ANWSVLIIAIGECILIAWIYGAEKFCGDIQR 499
           V    YL GL   T  GMY  QL+D YA + + +L +   ECI I+W +G  +F   I+ 
Sbjct: 422 VCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRD 481

Query: 500 MIGRQSKLWVYLWSAMWRIITPAALVFILVFNWIEYKPASYGHYVYPMWADAVGW 554
           MIG     W   W   W I TPA  V +  FN I++ P  Y  Y YP W+  +GW
Sbjct: 482 MIGYYPCCW---WKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGW 533


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score =  173 bits (422), Expect = 3e-45
 Identities = 87/212 (41%), Positives = 130/212 (61%), Gaps = 16/212 (7%)

Query: 48  NVWRFPYLCYNNGGGAFLIPFTVMLVIAGLPLMFMELSFGQYAALGPVAVYNKFCPLFRG 107
           NVWRFPYLCY NGGGAFLIP+ + LV+AG+P+ FMEL+ GQ   +G + V+ K  PLF+G
Sbjct: 3   NVWRFPYLCYKNGGGAFLIPYFLTLVLAGIPMFFMELALGQMLTVGGLGVF-KIAPLFKG 61

Query: 108 LGYGMVIVSSIVMLYYNLIIAWTIFYMTVSFSSIFYQLPWQNCKAEWSTKHCYSYEEAD- 166
           +GY   ++S  + +YY +I+AW IFY  +S  S   +LPW +C   W+TK+C +  + D 
Sbjct: 62  IGYAAAVMSCWMNVYYIVILAWAIFYFFMSMRS---ELPWGSCNNYWNTKNCVNPYDRDS 118

Query: 167 -ECEAQNGTY--YLRQCFNQSYSVSHNITALAKTALRRPPAEEYFTNQVLGLSSGIEETG 223
             C  Q   +  +++ C      V+  IT L        P +E++  + L +S G+E  G
Sbjct: 119 LSCWLQMTKHHNFIKVC--SVNDVNMTITELT------DPVKEFWERRALQISEGVEYVG 170

Query: 224 EIRLGMAMCLLAAWVIVFLCLCKGVQSSGKVV 255
            IR  +A  LL  W++ + C+ KGV+++GKVV
Sbjct: 171 NIRWELAGTLLLVWILCYFCIWKGVKTTGKVV 202


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.141    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,470
Number of Sequences: 429
Number of extensions: 7079
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 632
length of database: 140,377
effective HSP length: 62
effective length of query: 570
effective length of database: 113,779
effective search space: 64854030
effective search space used: 64854030
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 47 (23.0 bits)