GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000927-TA|BGIBMGA000927-
PA|IPR000175|Sodium:neurotransmitter symporter
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01930.2 68416.m00144 nodulin family protein similar to nodul...    33   0.57 
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind...    31   2.3  
At5g14120.1 68418.m01652 nodulin family protein similar to nodul...    31   3.1  
At1g67140.1 68414.m07638 expressed protein                             30   5.3  
At3g09470.2 68416.m01126 expressed protein                             29   7.1  
At3g09470.1 68416.m01125 expressed protein                             29   7.1  
At2g39900.1 68415.m04904 LIM domain-containing protein similar t...    29   7.1  
At5g27350.1 68418.m03266 sugar-porter family protein 1 (SFP1) id...    29   9.3  

>At3g01930.2 68416.m00144 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 584

 Score = 33.1 bits (72), Expect = 0.57
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 344 ATSFFAGLVIFSVIGFLAHELNVSVDRVVDQGAGLAFIVYPEVVTRLPISPLWSILFFVM 403
           +  F AG  +  ++   A  L  SV  +V  G G  +++   V  R PI PLW++   + 
Sbjct: 66  SVGFLAG-TLSEILPLWAALLVGSVQNLV--GYGWVWLI---VTGRAPILPLWAMCILIF 119

Query: 404 LLTLGLDSQFALMETVTTAILDRFPNFRQKKGWVVFIVAVFGYLGGLIFT 453
           +   G ++ F      T A++    NF + +G VV I+  F  LGG I +
Sbjct: 120 VGNNG-ETYFN-----TAALVSGVQNFPKSRGPVVGILKGFAGLGGAILS 163


>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
           cassette transporter ABC1, Homo sapiens, PIR2:A54774
          Length = 947

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 256 YFTALFPYVVLVILFFRGVTLPGAITGILFYLTPDFS-QLANAQVWGDAAVQIFFALSPA 314
           YF AL  + ++ ++ F      G++ G+ F+L  DFS Q +   V+ +  + I F LS A
Sbjct: 406 YFLALSTFYIIFLMIF------GSVIGLKFFLLNDFSLQFSFYFVYINLQISIAFLLSSA 459

Query: 315 WGGLITLS 322
           +  + T S
Sbjct: 460 FSKVETAS 467


>At5g14120.1 68418.m01652 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 579

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 386 VVTRLPISPLWSILFFVMLLTLGLDSQFALMETVTTAILDRFPNFRQKKGWVVFIVAVFG 445
           V  R PI PLW++   + +   G ++ F      T A++    NF + +G VV I+  F 
Sbjct: 102 VTGRAPILPLWAMCVLIFVGNNG-ETYFN-----TGALVSGVQNFPKSRGPVVGILKGFA 155

Query: 446 YLGGLIFT 453
            LGG I +
Sbjct: 156 GLGGAIIS 163


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 89   YAALGPVAVYNKFCPLFRGLGYGMVIVSSIVMLY---YNLIIAWTIFYMTVSFSSIFYQL 145
            Y+ +G +  Y  FC    G+   ++    I+ L+     L + + +  M V    IF+Q 
Sbjct: 1456 YSTVGEIISYPCFCYPAIGISPDIMYFMVIIPLFDEFLRLYMPYALEKMRVLMKFIFFQQ 1515

Query: 146  PWQNCKAEWSTKHCYSYEEADEC 168
              QNC  ++     ++Y   + C
Sbjct: 1516 ISQNCPKDFLESEEFAYSTIELC 1538


>At3g09470.2 68416.m01126 expressed protein
          Length = 437

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 240 VFLCLCKGV-QSSGKVVYFTALFPYVVLVILFFRGVTLPGAITGILFYLTPDFSQLANAQ 298
           VFL L  G  Q+SG  V  TA +P ++  IL      L   I+ +L  L    ++ A AQ
Sbjct: 327 VFLWLLLGYRQTSG--VLGTA-YPLIMAAILGIGDGILNTQISALLALLFKHDTEGAFAQ 383

Query: 299 --VWGDAAVQIFFALSP 313
             VW  AA+ I F LSP
Sbjct: 384 LKVWQSAAIAIVFFLSP 400


>At3g09470.1 68416.m01125 expressed protein
          Length = 464

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 240 VFLCLCKGV-QSSGKVVYFTALFPYVVLVILFFRGVTLPGAITGILFYLTPDFSQLANAQ 298
           VFL L  G  Q+SG  V  TA +P ++  IL      L   I+ +L  L    ++ A AQ
Sbjct: 327 VFLWLLLGYRQTSG--VLGTA-YPLIMAAILGIGDGILNTQISALLALLFKHDTEGAFAQ 383

Query: 299 --VWGDAAVQIFFALSP 313
             VW  AA+ I F LSP
Sbjct: 384 LKVWQSAAIAIVFFLSP 400


>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
           pollen specific LIM domain protein 1b [Nicotiana
           tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
           GI:4105772; contains Pfam profile PF00412: LIM domain
          Length = 200

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 151 KAEWSTKHCYSYEEADECEAQNGTYYLR----QCFNQSYSVSHNITALAKTALRRPPAEE 206
           KA +   HC S  +     +  G  Y R    Q F +S S S N  + AK    +P  E 
Sbjct: 32  KACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFKESGSFSKNFQSPAKPLTDKPTPEL 91

Query: 207 YFT-NQVLGLSSGIEE 221
             T +++ G+ SG ++
Sbjct: 92  NRTPSRLAGMFSGTQD 107


>At5g27350.1 68418.m03266 sugar-porter family protein 1 (SFP1)
           identical to sugar-porter family protein 1 [Arabidopsis
           thaliana] GI:14585699
          Length = 474

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 493 FCGDIQRMIGRQSKLWV--YLWSAMWRIITPAALVFILVFNWI 533
           FCG++  +IGR+  +WV  +L    W  I  A  V +L F  I
Sbjct: 87  FCGNLAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFGRI 129


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.141    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,660,548
Number of Sequences: 28952
Number of extensions: 583762
Number of successful extensions: 1643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1641
Number of HSP's gapped (non-prelim): 8
length of query: 632
length of database: 12,070,560
effective HSP length: 86
effective length of query: 546
effective length of database: 9,580,688
effective search space: 5231055648
effective search space used: 5231055648
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)