Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000926-TA|BGIBMGA000926-PA|IPR001585|Transaldolase,
IPR004730|Transaldolase AB
         (332 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12230.1 68414.m01415 transaldolase, putative similar to Swis...   160   1e-39
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    33   0.20 
At4g35410.1 68417.m05029 clathrin adaptor complex small chain fa...    29   5.8  
At4g09680.1 68417.m01590 expressed protein                             29   5.8  

>At1g12230.1 68414.m01415 transaldolase, putative similar to
           Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
           [Escherichia coli O157:H7]
          Length = 405

 Score =  160 bits (388), Expect = 1e-39
 Identities = 88/259 (33%), Positives = 149/259 (57%), Gaps = 9/259 (3%)

Query: 15  LDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ--YQHILDKAIKYGKDN 72
           L+ +   S +V DT  F+  + + PT AT + +L+L   G+    +++ +D A+      
Sbjct: 71  LNAVSAFSEIVPDTVVFDDFERFPPTAATVSSALLLGICGLPDTIFRNAVDMALADSSCA 130

Query: 73  G-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAE 131
           G  + E +++   +   V  G +++K++PGRVS EVDARL++D +  I K    + L+ E
Sbjct: 131 GLETTESRLSCFFNKAIVNVGGDLVKLVPGRVSTEVDARLAYDTNGIIRKVHDLLRLYNE 190

Query: 132 HGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVG 191
             +  +R+L K+ +TW+GI+AA+ LE + GI  ++T ++S  QA A ++A  ++I  FVG
Sbjct: 191 IDVPHDRLLFKIPATWQGIEAARLLESE-GIQTHMTFVYSFAQAAAASQAGASVIQIFVG 249

Query: 192 RILDWYVEHTKKT-----YEGKEDPGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEIREL 246
           R+ DW   H+  T      +  EDPG+  V + YNY  K+GYK+++M A+ RN  ++  L
Sbjct: 250 RLRDWARNHSGDTEIESAIKSGEDPGLALVKRSYNYIHKYGYKSKLMAAAVRNKQDLFSL 309

Query: 247 AGCDLLTISPKLLQELASS 265
            G D +    K+LQ L  S
Sbjct: 310 LGVDYVIAPLKVLQSLKDS 328


>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 5/151 (3%)

Query: 3   GEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHIL 62
           GE +  R     L    +H  V  D   FEA       D     ++     G+++ + I 
Sbjct: 497 GELERTRALYERLLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIF 556

Query: 63  DKAIKYGKDNGSSIEEQVAETL-DMLSVLFGCEIL---KIIPGRVSVEVDARLSFDKDAS 118
           D+A  Y KD+   ++E+ A  L D L++  G   L   +++  ++  +V  R    ++  
Sbjct: 557 DRANTYNKDSTPELKEERAMLLEDWLNMETGFGKLGDVRVVQSKLPKKVKKRKLSSREDG 616

Query: 119 IAKAIKFIN-LFAEHGIKKERILIKLASTWE 148
             +  ++ + LF E        +++ A  W+
Sbjct: 617 CTEYEEYTDYLFPEESETTSLKILEAAHKWK 647


>At4g35410.1 68417.m05029 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 124

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 156 LEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFV 190
           L++  G  C L L+F+ ++ IAC + + TL  PFV
Sbjct: 91  LDRYFGSVCELDLIFNFHKVIACCKHSRTL--PFV 123


>At4g09680.1 68417.m01590 expressed protein
          Length = 1075

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 71  DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDAR-LSFDKDASIAKAIKFINLF 129
           D  SSI+    + L   +    CE    +P   SV ++A  L +D   ++ +       F
Sbjct: 445 DRTSSIDVLTPDLLSDRNASRICEGHPGMPDCTSVFIEALVLPWDLICTVTEEEAAAPNF 504

Query: 130 AEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTL 168
            EH   +E    K   T  G+Q+   L   H I C +T+
Sbjct: 505 EEHDTSQEIRPHKRCKTNNGLQSQSFLSVPHEISCQMTI 543


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,008,061
Number of Sequences: 28952
Number of extensions: 272404
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 4
length of query: 332
length of database: 12,070,560
effective HSP length: 81
effective length of query: 251
effective length of database: 9,725,448
effective search space: 2441087448
effective search space used: 2441087448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)