GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000926-TA|BGIBMGA000926-PA|IPR001585|Transaldolase,
IPR004730|Transaldolase AB
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...   165   4e-41
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040...    38   0.015
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    28   9.1  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score =  165 bits (401), Expect = 4e-41
 Identities = 89/262 (33%), Positives = 151/262 (57%), Gaps = 9/262 (3%)

Query: 12  MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGME--QYQHILDKAIKYG 69
           ++ LD +   S +V DT  F+  +++ PT AT + SL+L  AG+   +++  +D A+  G
Sbjct: 63  VTELDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADG 122

Query: 70  KDNG-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINL 128
           + N     E++++  L       G E+  ++PGRVS E+DARL++D    I +  + + L
Sbjct: 123 ECNTMEKPEDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKL 182

Query: 129 FAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISP 188
           +++H +  ER+L K+ +TW+GI+A++ LE + GI  +LT ++S  QA A A+A  +++  
Sbjct: 183 YSDHDVLSERLLFKIPATWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGASVVQI 241

Query: 189 FVGRILDWYVEHT-----KKTYEGKEDPGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEI 243
           FVGR+ DW   H+      +  +  ED G+    K+Y Y  K GYKT++M A+ RN  ++
Sbjct: 242 FVGRVRDWARTHSGDPEIDEALKKGEDAGLALAKKVYAYIHKNGYKTKLMAAAIRNKQDV 301

Query: 244 RELAGCDLLTISPKLLQELASS 265
             L G D +    K+LQ L  S
Sbjct: 302 FSLLGIDYIIAPLKILQSLEES 323


>01_07_0031 -
           40603243-40603491,40603617-40603799,40603896-40604084,
           40604244-40604916,40605583-40605737
          Length = 482

 Score = 37.5 bits (83), Expect = 0.015
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 10/123 (8%)

Query: 58  YQHILDKAIKYGKDNGSSIEEQVAETLDMLSVLFG--CEILKIIPGRVSVEVDARLSFDK 115
           Y     + I  GKD  S+  E V + +     LF    +      G VSVEV  RL+ D 
Sbjct: 171 YDDQFKQLILAGKDAESAYWELVIKDIQDACKLFEPIYDQTDGADGYVSVEVSPRLANDT 230

Query: 116 DASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSL--Y 173
             ++ +A K+++   +    +  + IK+ +T E + + KE+   +GI  N+TL+FS+  Y
Sbjct: 231 QGTV-EAAKWLHKVVD----RPNVYIKIPATAECVPSIKEVIA-NGISVNVTLIFSIARY 284

Query: 174 QAI 176
           +A+
Sbjct: 285 EAV 287


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 2    SGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHI 61
            S EP  ++T + A DQ K   T+V   G   A    K     T  +L  +   M    ++
Sbjct: 3142 SAEPTKRKTVVGASDQAKASETIVDREGMMTAPYREKSLCPDTQHAL-RNVLEMSPSDNL 3200

Query: 62   LDKAIKYGKDNGSSIEEQVAETLDMLS 88
             D     G+++GS  E    ++ D ++
Sbjct: 3201 TDNPFA-GQEHGSFSEGSTTDSRDAIT 3226


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,259,560
Number of Sequences: 37544
Number of extensions: 307623
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 3
length of query: 332
length of database: 14,793,348
effective HSP length: 82
effective length of query: 250
effective length of database: 11,714,740
effective search space: 2928685000
effective search space used: 2928685000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)