GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000926-TA|BGIBMGA000926-PA|IPR001585|Transaldolase,
IPR004730|Transaldolase AB
         (332 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)               294   6e-80
SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072)                  33   0.43 
SB_17883| Best HMM Match : ShTK (HMM E-Value=0.16)                     30   2.3  
SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)                       30   2.3  
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)                 29   4.0  
SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0)                      28   9.3  

>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
          Length = 224

 Score =  294 bits (722), Expect = 6e-80
 Identities = 143/222 (64%), Positives = 166/222 (74%), Gaps = 1/222 (0%)

Query: 111 LSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLF 170
           LSFD +AS+AKA+KFI L+ E GI KER+LIKL+STWEGIQAA+ LE+ HGIHCNLTLLF
Sbjct: 2   LSFDVEASVAKALKFIELYKEAGISKERVLIKLSSTWEGIQAARILERDHGIHCNLTLLF 61

Query: 171 SLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTYEGKEDPGVVSVTKIYNYYKKFGYK 229
           +  QA+ACAEA VTLISPFVGRI DWYV  T +K YE  EDPGV SVT IYNYYKKFGYK
Sbjct: 62  AFVQAVACAEAGVTLISPFVGRIYDWYVAKTGQKEYEPHEDPGVKSVTAIYNYYKKFGYK 121

Query: 230 TQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXXNDIEKISLT 289
           T VMGASFRN G+I  L GCD LTISP LL++L +S                DIEK+ + 
Sbjct: 122 TVVMGASFRNVGQITGLTGCDKLTISPSLLEKLQNSNEAITQKLSSEEAGKLDIEKVEVD 181

Query: 290 ESEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIKTLLAN 331
           E  FRW LNED MAT+KL++GIR+FA D  KLE L+K  + N
Sbjct: 182 EKSFRWLLNEDAMATEKLAEGIRKFAVDAVKLEGLLKEKMQN 223


>SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072)
          Length = 677

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 39  PTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAETLD 85
           P D TT P L+  +  ME    IL + I  G+  G  +E+ +  T D
Sbjct: 460 PQDCTTPPKLLFGSEFMENILEILSRQIHSGEKGGRYLEDVLEMTAD 506


>SB_17883| Best HMM Match : ShTK (HMM E-Value=0.16)
          Length = 209

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 100 PGRVSVEVDARLSFDKDASIAKAIKFINLFAEHGIKKERI 139
           P +   ++  R+ F +D +  K  + I  FA+HG+ K+++
Sbjct: 29  PFKARCQITCRICFCRDQNRGKCKEIITSFAKHGVSKKQV 68


>SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)
          Length = 111

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)

Query: 92  GCEILKIIPGRVSVEVDARLSFDKDASIA 120
           GCE+L+  PG  SV VDA + FDK A+++
Sbjct: 50  GCEVLRFRPG--SVVVDAIVYFDKVANVS 76


>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
          Length = 899

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 107 VDARLSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNL 166
           +D  +  D   +I K    + L     +  + +LIKLA T E     +ELE K  I C+L
Sbjct: 597 IDGDVMCDVLDAINKNTSLMRLSLYTPVTSDELLIKLAETIEQRTLIEELELK--ISCSL 654

Query: 167 TLLFSLYQAIACAEAN-VTLISPFVGR 192
           T     Y A A +  N +  + P++ +
Sbjct: 655 THNAWSYFARALSTNNSIKALQPYINK 681


>SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0)
          Length = 467

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 193 ILDWYVEHTKKTYEGKEDPGVVSVTKIYN-YYKKFGYKTQVMGASFRNTGEIRELAG 248
           I+D ++  T  T +  EDP +V V+KI N +     +  Q  G  +RN G I  L G
Sbjct: 413 IID-HLNTTSSTQQENEDP-IVQVSKILNAHMNSLQWIDQNAGMLWRNGGPIGNLRG 467


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,763,299
Number of Sequences: 59808
Number of extensions: 362361
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 6
length of query: 332
length of database: 16,821,457
effective HSP length: 82
effective length of query: 250
effective length of database: 11,917,201
effective search space: 2979300250
effective search space used: 2979300250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)