GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000926-TA|BGIBMGA000926-PA|IPR001585|Transaldolase,
IPR004730|Transaldolase AB
         (332 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   400   e-112
AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical ...   204   5e-53
AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical ...   101   7e-22
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z82077-5|CAB63333.1|  783|Caenorhabditis elegans Hypothetical pr...    29   4.6  
L25598-7|AAA27938.3|  436|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    29   4.6  
U53180-3|AAA96284.1|  727|Caenorhabditis elegans Hypothetical pr...    29   6.1  

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  400 bits (986), Expect = e-112
 Identities = 194/316 (61%), Positives = 241/316 (76%), Gaps = 1/316 (0%)

Query: 12  MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKD 71
           MS L+QLK  S VVADTGDF A+KE++PTDATTNPSLIL+A+ MEQY  ++D+++ Y K+
Sbjct: 1   MSVLEQLKGASVVVADTGDFNAIKEFQPTDATTNPSLILAASKMEQYAALIDQSVAYAKE 60

Query: 72  NGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAE 131
           + S  +E +   +D L V+FG EILK IPGRVS EVDARLSFD  ASI +A+  I  + +
Sbjct: 61  HASGHQEVLQAAMDRLFVVFGKEILKTIPGRVSTEVDARLSFDTQASIDRALGLIAQYEK 120

Query: 132 HGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVG 191
            GI K+RILIKLASTWEGI+AAK LE KHGIHCN+TLLF+  QA+ACAE+ VTLISPFVG
Sbjct: 121 EGISKDRILIKLASTWEGIRAAKFLESKHGIHCNMTLLFNFEQAVACAESGVTLISPFVG 180

Query: 192 RILDWYVEHT-KKTYEGKEDPGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEIRELAGCD 250
           RI+DW+V++T +K Y  K+DPGVVSVT+I+NYYKK+ YKTQVM ASFRNT EI+ L GCD
Sbjct: 181 RIMDWFVKNTDQKAYTRKDDPGVVSVTRIFNYYKKYDYKTQVMAASFRNTEEIKGLVGCD 240

Query: 251 LLTISPKLLQELASSXXXXXXXXXXXXXXXNDIEKISLTESEFRWHLNEDHMATDKLSDG 310
           LLTISP LL++LA+                 D+ K+S+ E  FRW LNED MAT+KL++G
Sbjct: 241 LLTISPALLKQLAAETELAPVVLSTSHAKTLDLPKVSIDEKAFRWALNEDAMATEKLAEG 300

Query: 311 IRRFAADTRKLESLIK 326
           IR FA D R LE LI+
Sbjct: 301 IRNFAKDARTLEKLIE 316


>AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8b protein.
          Length = 165

 Score =  204 bits (499), Expect = 5e-53
 Identities = 97/162 (59%), Positives = 121/162 (74%), Gaps = 1/162 (0%)

Query: 166 LTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTYEGKEDPGVVSVTKIYNYYK 224
           +TLLF+  QA+ACAE+ VTLISPFVGRI+DW+V++T +K Y  K+DPGVVSVT+I+NYYK
Sbjct: 1   MTLLFNFEQAVACAESGVTLISPFVGRIMDWFVKNTDQKAYTRKDDPGVVSVTRIFNYYK 60

Query: 225 KFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXXNDIE 284
           K+ YKTQVM ASFRNT EI+ L GCDLLTISP LL++LA+                 D+ 
Sbjct: 61  KYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLKQLAAETELAPVVLSTSHAKTLDLP 120

Query: 285 KISLTESEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIK 326
           K+S+ E  FRW LNED MAT+KL++GIR FA D R LE LI+
Sbjct: 121 KVSIDEKAFRWALNEDAMATEKLAEGIRNFAKDARTLEKLIE 162


>AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical
           protein Y73B3A.2 protein.
          Length = 97

 Score =  101 bits (242), Expect = 7e-22
 Identities = 49/94 (52%), Positives = 61/94 (64%)

Query: 233 MGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXXNDIEKISLTESE 292
           M ASFRNT EI+ L GCDLLTISP LL++LA+                 D+ K+S+ E  
Sbjct: 1   MAASFRNTEEIKGLVGCDLLTISPALLKQLAAETEFAPVVLSTSHAKTLDLPKVSIDEKA 60

Query: 293 FRWHLNEDHMATDKLSDGIRRFAADTRKLESLIK 326
           FRW LN+D MAT+KL++GIR FA D R LE LI+
Sbjct: 61  FRWALNDDAMATEKLAEGIRNFAKDARTLEKLIE 94


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 71  DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSV-EVDARLSFDKDASIAKAIKFINLF 129
           D  S++ E++ E    ++++      +    +V + E  A+L+ +KD  I K  + I L 
Sbjct: 218 DPSSTMNEELTELRSQMNLIIEYNEKQETVWQVKLSEASAQLN-EKDLVIEKITRKIELL 276

Query: 130 AEHGIKKERILIKLASTWEGIQAAKELEK 158
            E+ +KK++ + +L   +E     K L+K
Sbjct: 277 QENNVKKDQRIYELEQCFESEDYCKILQK 305


>Z82077-5|CAB63333.1|  783|Caenorhabditis elegans Hypothetical
           protein W09C5.7 protein.
          Length = 783

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 66  IKYGKDNGSSIE--EQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAI 123
           +++ + NG  +E  E+  E LD   VL  C  ++ + G++S +    L F  D+S+    
Sbjct: 19  VEFDRRNGKVLEKPEESLEILDQDVVL--CGNVEFLIGKISFDEQHFLFFVVDSSVVACY 76

Query: 124 KFINLFAEHGIKK-ERIL 140
           +  +  + H I++ ER++
Sbjct: 77  RGTSAESSHSIRRIERVI 94


>L25598-7|AAA27938.3|  436|Caenorhabditis elegans Hypothetical
           protein C06G4.5 protein.
          Length = 436

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 139 ILIKLASTWEGIQAAKELEK-KHGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWY 197
           I++    T  G+    ++EK    I   +   F++YQ I C    + LI+ F  ++L   
Sbjct: 200 IILYAKETAPGMLTRMKIEKCTVDIDSQMFTAFTIYQFILCYCTPLVLIAFFYTKLLSKL 259

Query: 198 VEHTKKTYEGKEDP 211
            EHT +T++  + P
Sbjct: 260 REHT-RTFKSSQIP 272


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
            protein C48E7.6 protein.
          Length = 1764

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 281  NDIEKISLTESEFRWHLNEDHMATDKLSDGI 311
            N+  ++S TE    +HL   H ATD LSD +
Sbjct: 1209 NERNRVSWTELRTSFHLLYKHTATDSLSDSL 1239


>U53180-3|AAA96284.1|  727|Caenorhabditis elegans Hypothetical
           protein D1014.5 protein.
          Length = 727

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 234 GASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXXNDIEK-ISLTESE 292
           GA      E  E  G D  T SP    E+ S                ND EK +   E E
Sbjct: 260 GAELVEKSETEEKNG-DSSTKSP----EVTSESSVDTTTIEEQLKSNNDEEKQVDGNEKE 314

Query: 293 FRWH-LNEDHMATDKLSDGIRRFAADTRKLES 323
             +  LNEDH   +++ +G ++   +T  +E+
Sbjct: 315 STFRVLNEDHNENEEIGEGTKKVTEETTTVET 346


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.132    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,294,602
Number of Sequences: 27539
Number of extensions: 282961
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 8
length of query: 332
length of database: 12,573,161
effective HSP length: 82
effective length of query: 250
effective length of database: 10,314,963
effective search space: 2578740750
effective search space used: 2578740750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)