Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000925-TA|BGIBMGA000925-PA|IPR006811|Ssu72-like protein
         (179 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    25   0.36 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.9  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   1.9  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   5.8  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.7  

>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 83  FQVCNERFDVIITCEERVYDQVIEWFGSR-RSIYNQPVHVVNIDIQDNHE 131
           F  C E F   + C++++   ++ W+      I N  ++++ + IQ   E
Sbjct: 68  FNTCGEVFSAWVRCQDQILIFLVNWYPRLIIGIMNSTLNLIFLLIQTRFE 117


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 14   KGFNVKSYGTGE 25
            +G N KSYG GE
Sbjct: 2578 RGLNAKSYGPGE 2589


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 5/24 (20%), Positives = 16/24 (66%)

Query: 154 DNDIDELLHEFESKCHRPILNCIM 177
           + +   L+ + E++CH+P ++ ++
Sbjct: 147 NEETKRLVEDLEAECHKPYIDVVV 170


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 5/21 (23%), Positives = 14/21 (66%)

Query: 154 DNDIDELLHEFESKCHRPILN 174
           + + D+L+   + +C++P +N
Sbjct: 154 NEETDKLVEVLKEECYKPFIN 174


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 5/21 (23%), Positives = 14/21 (66%)

Query: 154 DNDIDELLHEFESKCHRPILN 174
           + + D+L+   + +C++P +N
Sbjct: 154 NEETDKLVEVLKEECYKPFVN 174


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 103 QVIEWFGSRRSIYNQPVHVVNIDIQDNH 130
           QV  WF +RRS Y + +    +   +N+
Sbjct: 164 QVKIWFQNRRSKYKKMMKAAQVSGGNNN 191


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,154
Number of Sequences: 317
Number of extensions: 2135
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 179
length of database: 114,650
effective HSP length: 53
effective length of query: 126
effective length of database: 97,849
effective search space: 12328974
effective search space used: 12328974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)