Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000925-TA|BGIBMGA000925-PA|IPR006811|Ssu72-like protein
(179 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc... 176 2e-45
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 27 1.2
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 2.1
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 3.7
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 3.7
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 4.9
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 6.4
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 25 6.4
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 6.4
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 6.4
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 25 8.5
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 197
Score = 176 bits (428), Expect = 2e-45
Identities = 84/180 (46%), Positives = 119/180 (66%), Gaps = 2/180 (1%)
Query: 2 NRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYY 61
NRSMEAH L G+ V S+GTG V+LPG S D+PN Y+FG YDEIY +L +D Y
Sbjct: 18 NRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIYKELEAQDSRLY 77
Query: 62 TQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHV 121
T NGLL MLDRNRRIK P ++Q + ++++ITCEER YD + E R N+PV++
Sbjct: 78 TANGLLKMLDRNRRIKRAPCRWQDQDSIYNIVITCEERCYDAICEDLYRRGETLNRPVYL 137
Query: 122 VNIDIQDNHEEATIGAFLISDMVTKMAQSDD-LDNDIDELLHEFESKCHR-PILNCIMFY 179
+N+DI+DNHEEA++G I D+V K+ ++ D L+ ++ +F+S + P+L I F+
Sbjct: 138 INVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQSNHPKLPVLYTIHFF 197
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 13 KKGFNVKSYGTGEKVKLPGASADRPN-CYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLD 71
KK F + + +K+KL ++ N C F ++DE+ ND KN + L+ L+
Sbjct: 327 KKQFYIPAIIAKDKLKLRSTYVNQLNQCCTFNPIFDELVND--TSTKNCSSIGSLIRQLN 384
Query: 72 RN 73
++
Sbjct: 385 KS 386
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 2.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 91 DVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGAFLI-SDMVTKMAQ 149
+V++ E R+ + + +GS YN V ++ QD H I A L+ + A
Sbjct: 993 EVLLEKEIRLLYRAMIRYGSLEHRYNDIVKYADLTTQDAHVIKKIAADLVTASRKAVSAA 1052
Query: 150 SDDLDND 156
DL ND
Sbjct: 1053 EKDLSND 1059
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 113 SIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESK 167
+I Q + +++IQD+ + L+ D+ + Q D+L++ I+ L + E K
Sbjct: 11 TILGQKRELEDVEIQDDDIQEVSKEDLLKDVRVRSIQFDELESKIEGLQNLAEEK 65
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 3.7
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 64 NGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 115
N L+ LD N + K PEK + R+ C VYD ++ + RS +
Sbjct: 513 NDLVRSLDENLKTKSGPEKLYLIMARY-----CLRCVYDDKMDSLWNSRSFW 559
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 33 SADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGL 66
S D+ N ++F + +DE L + N++ N L
Sbjct: 587 SNDKQNTHDFQISHDENLIQLFNDESNFFNLNDL 620
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 33 SADRPN--CYEFGVLYDEIYNDLMEKDKN 59
SA +PN C +G D+IY D+M + N
Sbjct: 316 SAKQPNDACSLYGSRIDDIYRDIMPPNNN 344
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.0 bits (52), Expect = 6.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 147 MAQSDDLDNDIDELLHEFESKCHR 170
MAQ D + I E+ H+ ES C+R
Sbjct: 130 MAQYDQKLSTIKEMYHKLESYCNR 153
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 6.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 40 YEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQV 85
YE G L + DLME K Y+ G + NR E++Q+
Sbjct: 189 YENGKLVEIDGKDLMETAKPYFIYPGYAFVCYPNRDSTVYQERYQI 234
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 6.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 69 MLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWF 108
+L RN + P P+ F+VC + F +++ + Q IE F
Sbjct: 467 VLSRNA-VSPVPQVFEVCCDIFYLMVFSLRAHFKQEIEVF 505
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.0 bits (52), Expect = 6.4
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 81 EKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHVV-NIDIQDN 129
EKF+ ++ F+ ++ RV+ VI+ F + +S + + V+ N + DN
Sbjct: 326 EKFEESSKNFEKLVIMSLRVFILVIQEFCNTKSSHPETAQVLYNSFLVDN 375
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 84 QVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQD 128
++C + +IT D +W + ++ NQ V NI+ Q+
Sbjct: 50 KICGQSHQCLITALSAPIDVYSDWIDACDAVANQAKEVDNINDQE 94
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 24.6 bits (51), Expect = 8.5
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 42 FGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVY 101
F V +D+ D+ +NY + LLH R K P + V R D +T +E+ +
Sbjct: 248 FDVGFDDKLEDI-PPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGW 306
Query: 102 DQVIEWFGSRRSI 114
E GS I
Sbjct: 307 TSATEHTGSADQI 319
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 898,323
Number of Sequences: 5004
Number of extensions: 39386
Number of successful extensions: 105
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 15
length of query: 179
length of database: 2,362,478
effective HSP length: 69
effective length of query: 110
effective length of database: 2,017,202
effective search space: 221892220
effective search space used: 221892220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
- SilkBase 1999-2023 -