GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000925-TA|BGIBMGA000925-PA|IPR006811|Ssu72-like protein
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0437 - 3449611-3449715,3451831-3451878,3452002-3452120,345...   140   4e-34
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553...    33   0.099
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480...    32   0.23 
07_01_0962 - 8075975-8077282                                           27   8.6  

>12_01_0437 -
           3449611-3449715,3451831-3451878,3452002-3452120,
           3452277-3452422,3452760-3452986
          Length = 214

 Score =  140 bits (340), Expect = 4e-34
 Identities = 70/153 (45%), Positives = 98/153 (64%), Gaps = 2/153 (1%)

Query: 1   MNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNY 60
           MNRSMEAH+ L + G +V SYGTG  VKLPG S   PN Y+FG  Y+ IY+DL  KD + 
Sbjct: 17  MNRSMEAHSLLGRAGLDVASYGTGTHVKLPGPSLHEPNVYDFGTPYNVIYDDLRRKDPDL 76

Query: 61  YTQNGLLHMLDRNRRIKPCPEKFQ--VCNERFDVIITCEERVYDQVIEWFGSRRSIYNQP 118
           Y +NGLL ML RN  +K  P+++Q    +  FDVI + EERV+D +++   +R     + 
Sbjct: 77  YKRNGLLPMLKRNTSVKLAPQRWQDNAGDGLFDVIFSFEERVFDLIVDDMHNREQRMLKN 136

Query: 119 VHVVNIDIQDNHEEATIGAFLISDMVTKMAQSD 151
             ++N+D++DNHEEA +GA L  D+  K +  D
Sbjct: 137 ALIINMDVKDNHEEAGVGAKLALDLCQKPSLLD 169


>09_02_0569 -
           10752756-10753164,10753229-10753644,10754149-10755349,
           10756770-10756991,10757615-10757767,10757883-10758034,
           10758142-10758222,10758353-10758598,10759394-10759516
          Length = 1000

 Score = 33.5 bits (73), Expect = 0.099
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 86  CNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGA--FLISDM 143
           C    + I  C+  +  + I+W   +R+  + P+H V++ I    +   + A  FL S +
Sbjct: 50  CRVHKETINLCKSVLQRKSIDWISVQRNDMSNPIHDVDLVISVGGDGTLLRASHFLNSSI 109

Query: 144 VTKMAQSD-DLDNDIDELLHEFESK 167
                 SD    +++DEL  EF+++
Sbjct: 110 PVLGVNSDPTCPDEVDELTDEFDAR 134


>06_03_0783 -
           24546403-24546765,24547202-24547262,24547899-24548004,
           24548118-24551600,24553134-24553179
          Length = 1352

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 41  EFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNR--RIKPCPEKFQVCNERFDVIITCEE 98
           ++G     + +DLM  D  ++T NG  + LD +    I P      +  ER D++ TC+ 
Sbjct: 540 QYGGTVHYVMHDLMN-DLAFHTSNGECYRLDVDEPEEIPPAVRHLSILAERIDLLCTCKL 598

Query: 99  RVYDQVIEW 107
           +    +I W
Sbjct: 599 QRLRTLIIW 607


>07_01_0962 - 8075975-8077282
          Length = 435

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 32  ASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFD 91
           A A    CY   V  D I   L   D N +  +GLLHM  +  ++      F+  + + D
Sbjct: 331 AEAKNKGCYGQQVHADAIKRGL---DMNQFVGSGLLHMYAKEGQLADAARAFEAIDGKPD 387

Query: 92  VI 93
            +
Sbjct: 388 AV 389


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,377,456
Number of Sequences: 37544
Number of extensions: 224340
Number of successful extensions: 524
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 4
length of query: 179
length of database: 14,793,348
effective HSP length: 78
effective length of query: 101
effective length of database: 11,864,916
effective search space: 1198356516
effective search space used: 1198356516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)