Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000925-TA|BGIBMGA000925-PA|IPR006811|Ssu72-like protein
(179 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008070-1|AAH08070.1| 194|Homo sapiens SSU72 RNA polymerase II... 246 4e-65
AL645728-3|CAI22947.1| 194|Homo sapiens SSU72 RNA polymerase II... 246 4e-65
AK001809-1|BAA91921.1| 194|Homo sapiens protein ( Homo sapiens ... 246 4e-65
AJ276409-1|CAC81713.1| 194|Homo sapiens hypothetical protein pr... 246 4e-65
AF277178-1|AAK07538.1| 194|Homo sapiens PNAS-120 protein. 244 1e-64
AL645728-2|CAI22946.1| 162|Homo sapiens SSU72 RNA polymerase II... 165 1e-40
AL645728-4|CAI22948.1| 111|Homo sapiens SSU72 RNA polymerase II... 149 7e-36
AL645728-1|CAI22945.1| 153|Homo sapiens SSU72 RNA polymerase II... 87 4e-17
AK023110-1|BAB14410.1| 153|Homo sapiens protein ( Homo sapiens ... 87 4e-17
AY273815-1|AAQ16156.1| 2623|Homo sapiens bone specific CMF608 pr... 31 3.0
AK128160-1|BAC87305.1| 632|Homo sapiens protein ( Homo sapiens ... 31 3.0
>BC008070-1|AAH08070.1| 194|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 194
Score = 246 bits (601), Expect = 4e-65
Identities = 109/178 (61%), Positives = 138/178 (77%)
Query: 2 NRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYY 61
NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++YNDL+ KDK Y
Sbjct: 17 NRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76
Query: 62 TQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHV 121
TQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E SR QPVHV
Sbjct: 77 TQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHV 136
Query: 122 VNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPILNCIMFY 179
VN+DIQDNHEEAT+GAFLI ++ + ++D++N+IDELL EFE K R L+ + FY
Sbjct: 137 VNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
>AL645728-3|CAI22947.1| 194|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 194
Score = 246 bits (601), Expect = 4e-65
Identities = 109/178 (61%), Positives = 138/178 (77%)
Query: 2 NRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYY 61
NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++YNDL+ KDK Y
Sbjct: 17 NRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76
Query: 62 TQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHV 121
TQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E SR QPVHV
Sbjct: 77 TQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHV 136
Query: 122 VNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPILNCIMFY 179
VN+DIQDNHEEAT+GAFLI ++ + ++D++N+IDELL EFE K R L+ + FY
Sbjct: 137 VNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
>AK001809-1|BAA91921.1| 194|Homo sapiens protein ( Homo sapiens
cDNA FLJ10947 fis, clone PLACE1000066, weakly similar to
SSU72 PROTEIN. ).
Length = 194
Score = 246 bits (601), Expect = 4e-65
Identities = 109/178 (61%), Positives = 138/178 (77%)
Query: 2 NRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYY 61
NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++YNDL+ KDK Y
Sbjct: 17 NRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76
Query: 62 TQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHV 121
TQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E SR QPVHV
Sbjct: 77 TQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHV 136
Query: 122 VNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPILNCIMFY 179
VN+DIQDNHEEAT+GAFLI ++ + ++D++N+IDELL EFE K R L+ + FY
Sbjct: 137 VNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
>AJ276409-1|CAC81713.1| 194|Homo sapiens hypothetical protein
protein.
Length = 194
Score = 246 bits (601), Expect = 4e-65
Identities = 109/178 (61%), Positives = 138/178 (77%)
Query: 2 NRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYY 61
NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++YNDL+ KDK Y
Sbjct: 17 NRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76
Query: 62 TQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHV 121
TQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E SR QPVHV
Sbjct: 77 TQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHV 136
Query: 122 VNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPILNCIMFY 179
VN+DIQDNHEEAT+GAFLI ++ + ++D++N+IDELL EFE K R L+ + FY
Sbjct: 137 VNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
>AF277178-1|AAK07538.1| 194|Homo sapiens PNAS-120 protein.
Length = 194
Score = 244 bits (598), Expect = 1e-64
Identities = 108/178 (60%), Positives = 138/178 (77%)
Query: 2 NRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYY 61
NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++YNDL+ KDK Y
Sbjct: 17 NRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76
Query: 62 TQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHV 121
TQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E SR QPVHV
Sbjct: 77 TQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHV 136
Query: 122 VNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPILNCIMFY 179
VN+DIQDNHEEAT+GAFLI ++ + ++D++N+IDELL EFE + R L+ + FY
Sbjct: 137 VNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEERVGRTFLHTVCFY 194
>AL645728-2|CAI22946.1| 162|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 162
Score = 165 bits (400), Expect = 1e-40
Identities = 70/105 (66%), Positives = 87/105 (82%)
Query: 2 NRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYY 61
NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++YNDL+ KDK Y
Sbjct: 17 NRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76
Query: 62 TQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIE 106
TQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E
Sbjct: 77 TQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVE 121
>AL645728-4|CAI22948.1| 111|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 111
Score = 149 bits (360), Expect = 7e-36
Identities = 67/111 (60%), Positives = 85/111 (76%)
Query: 69 MLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQD 128
MLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E SR QPVHVVN+DIQD
Sbjct: 1 MLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQD 60
Query: 129 NHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPILNCIMFY 179
NHEEAT+GAFLI ++ + ++D++N+IDELL EFE K R L+ + FY
Sbjct: 61 NHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 111
>AL645728-1|CAI22945.1| 153|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 153
Score = 86.6 bits (205), Expect = 4e-17
Identities = 36/60 (60%), Positives = 46/60 (76%)
Query: 2 NRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYY 61
NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++YNDL+ KDK Y
Sbjct: 17 NRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76
>AK023110-1|BAB14410.1| 153|Homo sapiens protein ( Homo sapiens
cDNA FLJ13048 fis, clone NT2RP3001399, weakly similar
to SSU72 PROTEIN. ).
Length = 153
Score = 86.6 bits (205), Expect = 4e-17
Identities = 36/60 (60%), Positives = 46/60 (76%)
Query: 2 NRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYY 61
NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++YNDL+ KDK Y
Sbjct: 17 NRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76
>AY273815-1|AAQ16156.1| 2623|Homo sapiens bone specific CMF608
protein.
Length = 2623
Score = 30.7 bits (66), Expect = 3.0
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 24 GEKVKLPGASADRPNCYEFGVLYD--EIYNDLMEKDKNYYTQNGLLH---MLDRNRRIKP 78
GE +KLP + P + VL D E+ K + NG L+ + +R
Sbjct: 1857 GESLKLPCTAKGTPQPSVYWVLSDGTEVKPLQFTNSKLFLFSNGTLYIRNLASSDRGTYE 1916
Query: 79 CPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYN 116
C +ER V++T EERV IE +R+ N
Sbjct: 1917 CIATSSTGSERRVVMLTMEERVTSPRIEAASQKRTEVN 1954
>AK128160-1|BAC87305.1| 632|Homo sapiens protein ( Homo sapiens
cDNA FLJ46283 fis, clone TESTI4031173. ).
Length = 632
Score = 30.7 bits (66), Expect = 3.0
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 24 GEKVKLPGASADRPNCYEFGVLYD--EIYNDLMEKDKNYYTQNGLLH---MLDRNRRIKP 78
GE +KLP + P + VL D E+ K + NG L+ + +R
Sbjct: 484 GESLKLPCTAKGTPQPSVYWVLSDGTEVKPLQFTNSKLFLFSNGTLYIRNLASSDRGTYE 543
Query: 79 CPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYN 116
C +ER V++T EERV IE +R+ N
Sbjct: 544 CIATSSTGSERRVVMLTMEERVTSPRIEAASQKRTEVN 581
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,428,229
Number of Sequences: 224733
Number of extensions: 1045256
Number of successful extensions: 1732
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1723
Number of HSP's gapped (non-prelim): 11
length of query: 179
length of database: 73,234,838
effective HSP length: 85
effective length of query: 94
effective length of database: 54,132,533
effective search space: 5088458102
effective search space used: 5088458102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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