GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000925-TA|BGIBMGA000925-PA|IPR006811|Ssu72-like protein
         (179 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060426-1|AAL25465.1|  195|Drosophila melanogaster LD40846p pro...   258   4e-69
AE014298-2908|AAF48998.1|  195|Drosophila melanogaster CG14216-P...   258   4e-69
AY069175-1|AAL39320.1|  285|Drosophila melanogaster GH22096p pro...    28   6.4  
AE013599-2421|AAF57902.1|  285|Drosophila melanogaster CG6984-PA...    28   6.4  
AY128505-1|AAM75098.1| 1533|Drosophila melanogaster SD07147p pro...    28   8.4  
AE014297-1403|AAF54717.4| 1975|Drosophila melanogaster CG6977-PA...    28   8.4  
AE013599-203|AAM70811.1|  352|Drosophila melanogaster CG15909-PA...    28   8.4  

>AY060426-1|AAL25465.1|  195|Drosophila melanogaster LD40846p
           protein.
          Length = 195

 Score =  258 bits (631), Expect = 4e-69
 Identities = 115/179 (64%), Positives = 143/179 (79%)

Query: 1   MNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNY 60
           MNRSMEAH FL KKGFNV+SYGTGE+VKLPG + D+PN YEFG  Y++IY DL  KDK +
Sbjct: 17  MNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDIYRDLESKDKEF 76

Query: 61  YTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVH 120
           YTQNGLLHMLDRNRRIK CPE+FQ   E+FD+I+T EERVYD V+    S  S+ N+PVH
Sbjct: 77  YTQNGLLHMLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMHMESMESVDNRPVH 136

Query: 121 VVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPILNCIMFY 179
           V+N+D+ DN E+A +GAF+I+DM+  MA+S DLDNDIDEL+ EFE +  R IL+ ++FY
Sbjct: 137 VLNVDVVDNAEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY 195


>AE014298-2908|AAF48998.1|  195|Drosophila melanogaster CG14216-PA
           protein.
          Length = 195

 Score =  258 bits (631), Expect = 4e-69
 Identities = 115/179 (64%), Positives = 143/179 (79%)

Query: 1   MNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNY 60
           MNRSMEAH FL KKGFNV+SYGTGE+VKLPG + D+PN YEFG  Y++IY DL  KDK +
Sbjct: 17  MNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDIYRDLESKDKEF 76

Query: 61  YTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVH 120
           YTQNGLLHMLDRNRRIK CPE+FQ   E+FD+I+T EERVYD V+    S  S+ N+PVH
Sbjct: 77  YTQNGLLHMLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMHMESMESVDNRPVH 136

Query: 121 VVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPILNCIMFY 179
           V+N+D+ DN E+A +GAF+I+DM+  MA+S DLDNDIDEL+ EFE +  R IL+ ++FY
Sbjct: 137 VLNVDVVDNAEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY 195


>AY069175-1|AAL39320.1|  285|Drosophila melanogaster GH22096p
           protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 140 ISDMVTKMAQSDDLDNDIDELLHEFESK 167
           IS MVTK   +++LD +I+E+ +  ++K
Sbjct: 200 ISGMVTKAVPAEELDKEIEEITNAIKAK 227


>AE013599-2421|AAF57902.1|  285|Drosophila melanogaster CG6984-PA
           protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 140 ISDMVTKMAQSDDLDNDIDELLHEFESK 167
           IS MVTK   +++LD +I+E+ +  ++K
Sbjct: 200 ISGMVTKAVPAEELDKEIEEITNAIKAK 227


>AY128505-1|AAM75098.1| 1533|Drosophila melanogaster SD07147p
           protein.
          Length = 1533

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 114 IYNQPVHVVNIDIQDNHEEATIGAFLISD 142
           +  QPV  V   +Q N E+++IG F ISD
Sbjct: 572 VEEQPVGTVLTTLQANDEDSSIGEFNISD 600


>AE014297-1403|AAF54717.4| 1975|Drosophila melanogaster CG6977-PA
            protein.
          Length = 1975

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 114  IYNQPVHVVNIDIQDNHEEATIGAFLISD 142
            +  QPV  V   +Q N E+++IG F ISD
Sbjct: 1014 VEEQPVGTVLTTLQANDEDSSIGEFNISD 1042


>AE013599-203|AAM70811.1|  352|Drosophila melanogaster CG15909-PA
           protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 46  YDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCP 80
           YDEI   ++EK   +Y+Q    H+     ++ P P
Sbjct: 194 YDEILQRMIEKTSPHYSQQSNSHLETHPNQLAPAP 228


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.322    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,353,945
Number of Sequences: 52641
Number of extensions: 408040
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 7
length of query: 179
length of database: 24,830,863
effective HSP length: 80
effective length of query: 99
effective length of database: 20,619,583
effective search space: 2041338717
effective search space used: 2041338717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)