GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000925-TA|BGIBMGA000925-PA|IPR006811|Ssu72-like protein
         (179 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40030-1|AAR12977.1|  235|Caenorhabditis elegans Hypothetical pr...   211   2e-55
AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical...    31   0.47 
AC006708-8|AAF60429.3|  481|Caenorhabditis elegans Hypothetical ...    29   1.4  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL023822-1|CAD21649.1|  672|Caenorhabditis elegans Hypothetical ...    28   3.3  
AL021572-3|CAA16517.2|  672|Caenorhabditis elegans Hypothetical ...    28   3.3  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    28   3.3  
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p...    27   5.8  
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p...    27   5.8  
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p...    27   5.8  
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr...    27   5.8  
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.     27   5.8  
U42843-5|AAA83597.2|  375|Caenorhabditis elegans Beclin (human a...    27   7.7  
AL132902-8|CAC14423.1|  664|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U40030-1|AAR12977.1|  235|Caenorhabditis elegans Hypothetical
           protein T13C2.4 protein.
          Length = 235

 Score =  211 bits (516), Expect = 2e-55
 Identities = 94/181 (51%), Positives = 131/181 (72%), Gaps = 2/181 (1%)

Query: 1   MNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFG-VLYDEIYNDLMEKDKN 59
           MNRSMEAH  L K+GFN++SYG+G +VK+PG + D+PNCYEFG   Y++IY DL  KD +
Sbjct: 55  MNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTTYEDIYADLTNKDLH 114

Query: 60  YYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPV 119
            YTQNGLLHM+DRNRRIK  P++FQ     FD+++  EERV+DQV+++          PV
Sbjct: 115 LYTQNGLLHMVDRNRRIKSRPQRFQAETREFDIVLCLEERVFDQVVDFLNRSVGKSGNPV 174

Query: 120 HVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEF-ESKCHRPILNCIMF 178
           HV+NIDI+DN EEAT GAF ++D+  K+ +S+D + DID+++ +  E+   R +L+ I F
Sbjct: 175 HVINIDIEDNAEEATFGAFFVADLCEKLERSEDFEEDIDQIITDLEENNPKRNLLHTICF 234

Query: 179 Y 179
           Y
Sbjct: 235 Y 235


>AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.12a protein.
          Length = 1187

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 1   MNRSMEAHAFLVKKGFNVKSYGT-GEKVKLPGASADRPNCYEFGVLYDEI-YNDLMEKDK 58
           M  ++  +A L +KG  +    T G K  L   +  RP  ++F +   E+ Y D++E D+
Sbjct: 76  MGTTVATNALLERKGERIGLLITKGFKDLLFIGNQARPKIFDFNIQIPEVLYEDVVEVDE 135

Query: 59  NYYTQNGLLHMLDRNRRIKPCPEKFQVCNER 89
                     +LD N +I+      Q+  E+
Sbjct: 136 RVLILEQTKELLDENAQIETTINGLQIVVEK 166


>AC006708-8|AAF60429.3|  481|Caenorhabditis elegans Hypothetical
           protein Y110A7A.15a protein.
          Length = 481

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 30  PGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQ 84
           P    + P  Y  GV YDEI ND +  D+N    N LL M      I  C    Q
Sbjct: 162 PDLLKNEPLGYPLGVAYDEIRNDWLICDRN---MNKLLIMNVEKEEIHVCKGAIQ 213


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
            protein Y102A11A.3 protein.
          Length = 1571

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 115  YNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHR 170
            Y+Q + V N+D   N +EA      I    T  ++S +   DID+L H FE  C R
Sbjct: 1140 YDQQLVVFNLD---NIQEACGQTNNIGSTETS-SKSTEQSEDIDKLDHHFEDACER 1191


>Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical
           protein F54C9.9 protein.
          Length = 740

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 112 RSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDN-DIDELLHE 163
           +SI+N   + V  +IQ+N +E  I     SDM  + +  +D DN D+DEL  E
Sbjct: 383 QSIFNDEYYGVEENIQENEDEKPI----FSDM--EDSDYEDYDNLDVDELKRE 429


>AL023822-1|CAD21649.1|  672|Caenorhabditis elegans Hypothetical
           protein W06H3.3 protein.
          Length = 672

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 46  YDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERV 100
           Y+   +  + +D N  T     H+++R RR   C +  Q+     D I+   ERV
Sbjct: 80  YERFLDIRLTRDNNITTGKMFKHVMERERRGDYCGKTVQMIPHLTDAIVDWIERV 134


>AL021572-3|CAA16517.2|  672|Caenorhabditis elegans Hypothetical
           protein W06H3.3 protein.
          Length = 672

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 46  YDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERV 100
           Y+   +  + +D N  T     H+++R RR   C +  Q+     D I+   ERV
Sbjct: 80  YERFLDIRLTRDNNITTGKMFKHVMERERRGDYCGKTVQMIPHLTDAIVDWIERV 134


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 119  VHVVNIDIQDNHEEATIGAFLISDMVTKMAQS--DDLDNDIDELLHEFE 165
            VH VN+   D  + +++ AF +SD  +   +S  D LD+DI E    F+
Sbjct: 1069 VHAVNLTKFDLSDPSSLAAFALSDDDSDSDKSTQDGLDDDISEESDAFQ 1117


>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
            protein ZK617.1c protein.
          Length = 6629

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 101  YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 157
            YD  +  F   +  Y QPV + +   +D  D HEE   GAF +   VT+ A  ++     
Sbjct: 5705 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 5762

Query: 158  DELLHEFESKCHR 170
                HE + +  R
Sbjct: 5763 VMTPHESDKETVR 5775


>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
            protein ZK617.1b protein.
          Length = 7158

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 101  YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 157
            YD  +  F   +  Y QPV + +   +D  D HEE   GAF +   VT+ A  ++     
Sbjct: 6234 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 6291

Query: 158  DELLHEFESKCHR 170
                HE + +  R
Sbjct: 6292 VMTPHESDKETVR 6304


>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
            protein ZK617.1a protein.
          Length = 6839

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 101  YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 157
            YD  +  F   +  Y QPV + +   +D  D HEE   GAF +   VT+ A  ++     
Sbjct: 5915 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 5972

Query: 158  DELLHEFESKCHR 170
                HE + +  R
Sbjct: 5973 VMTPHESDKETVR 5985


>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
            ZK617.1c protein.
          Length = 6629

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 101  YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 157
            YD  +  F   +  Y QPV + +   +D  D HEE   GAF +   VT+ A  ++     
Sbjct: 5705 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 5762

Query: 158  DELLHEFESKCHR 170
                HE + +  R
Sbjct: 5763 VMTPHESDKETVR 5775


>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
            ZK617.1b protein.
          Length = 7158

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 101  YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 157
            YD  +  F   +  Y QPV + +   +D  D HEE   GAF +   VT+ A  ++     
Sbjct: 6234 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 6291

Query: 158  DELLHEFESKCHR 170
                HE + +  R
Sbjct: 6292 VMTPHESDKETVR 6304


>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
            ZK617.1a protein.
          Length = 6839

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 101  YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 157
            YD  +  F   +  Y QPV + +   +D  D HEE   GAF +   VT+ A  ++     
Sbjct: 5915 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 5972

Query: 158  DELLHEFESKCHR 170
                HE + +  R
Sbjct: 5973 VMTPHESDKETVR 5985


>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
          Length = 6048

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 101  YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 157
            YD  +  F   +  Y QPV + +   +D  D HEE   GAF +   VT+ A  ++     
Sbjct: 5124 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 5181

Query: 158  DELLHEFESKCHR 170
                HE + +  R
Sbjct: 5182 VMTPHESDKETVR 5194


>U42843-5|AAA83597.2|  375|Caenorhabditis elegans Beclin (human
           autophagy) homologprotein 1 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 4   SMEAHAF--LVKKGFNVKSYGT-GEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNY 60
           +M +H++  L + G ++++Y   G+   L G+S   P    F  L + +  +L +++KN+
Sbjct: 261 AMGSHSYIKLRRNGIDMETYALYGQGTPLSGSSGIDPGIRRFLQLLEFLLKELKDRNKNF 320


>AL132902-8|CAC14423.1|  664|Caenorhabditis elegans Hypothetical
           protein Y71A12B.9 protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 155 NDIDELLHEFESKCHRPILNCIMF 178
           ND    LH FE   H  +++CI F
Sbjct: 76  NDSGHALHHFEETSHPVVIDCISF 99


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,904,178
Number of Sequences: 27539
Number of extensions: 216756
Number of successful extensions: 521
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 17
length of query: 179
length of database: 12,573,161
effective HSP length: 77
effective length of query: 102
effective length of database: 10,452,658
effective search space: 1066171116
effective search space used: 1066171116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)