GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000925-TA|BGIBMGA000925-PA|IPR006811|Ssu72-like protein
         (179 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73820.1 68414.m08547 Ssu72-like family protein contains Pfam...   152   1e-37
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro...    28   3.1  
At1g04370.1 68414.m00427 ethylene-responsive factor, putative Si...    28   3.1  
At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--t...    27   7.2  
At4g31680.1 68417.m04498 transcriptional factor B3 family protei...    27   7.2  
At3g54710.1 68416.m06053 expressed protein                             27   7.2  
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ...    27   7.2  
At4g20940.1 68417.m03034 leucine-rich repeat family protein cont...    27   9.5  
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta...    27   9.5  
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta...    27   9.5  
At3g11340.1 68416.m01379 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.5  
At1g77020.1 68414.m08969 DNAJ heat shock N-terminal domain-conta...    27   9.5  

>At1g73820.1 68414.m08547 Ssu72-like family protein contains Pfam
           profile PF04722: Ssu72-like protein; similar to SSU72
           protein (Swiss-Prot:P53538) [Saccharomyces cerevisiae]
          Length = 193

 Score =  152 bits (369), Expect = 1e-37
 Identities = 71/180 (39%), Positives = 115/180 (63%), Gaps = 2/180 (1%)

Query: 2   NRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYY 61
           NRSMEAHA L ++G +V SYGTG  VKLPG S   PN Y+FG  Y +++++L  KD   Y
Sbjct: 14  NRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQMFDELRRKDPELY 73

Query: 62  TQNGLLHMLDRNRRIKPCPEKFQ--VCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPV 119
            +NG+L M+ RN  +K  P+++Q    +  FDV++T EE+V+D V+E   +R     + +
Sbjct: 74  KRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLEDLNNREQSLTKTI 133

Query: 120 HVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPILNCIMFY 179
            V+N++++DNHEEA IG  L  ++  ++  ++  ++ ID+++  FE +  R ++  I FY
Sbjct: 134 LVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEKQHRRKLVYSISFY 193


>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400);
           phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
           thaliana]
          Length = 837

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 20  SYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPC 79
           S+ T  +     +S    + Y  GVL  E++  +  +++   T + L H +   + +  C
Sbjct: 208 SWYTSPEEDFGSSSTCASDVYRLGVLLFELFCPVPSREEKSRTMSSLRHRVLPPQILLKC 267

Query: 80  PEKFQVCNERFDVIITCEERVYDQV-IEWFGSRRSIYNQPVHVVNIDIQDN-HEEATIGA 137
           P++   C        TC   + D +  E+    R   N       I+++D   E+ ++  
Sbjct: 268 PKEASFCLWLLHPEPTCRPSMSDLLQSEFITEPRD--NLEEREAAIELRDRIEEQESLLE 325

Query: 138 FLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPIL 173
           FL+     K   +  L + +  L  + E    R ++
Sbjct: 326 FLLLIQQRKQESAYRLQDTVSLLSSDIEQVVKRQLI 361


>At1g04370.1 68414.m00427 ethylene-responsive factor, putative
           Similar to Nicotiana EREBP-3 (gb|D38124)
          Length = 133

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 22  GTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNY 60
           GTG       +S+     +EF  L D + ++L+E  +NY
Sbjct: 83  GTGSSSTAANSSSSSQQVFEFEYLDDSVLDELLEYGENY 121


>At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--tRNA
           ligase (THRRS) identical to SP|O04630 Threonyl-tRNA
           synthetase, mitochondrial precursor (EC 6.1.1.3)
           (Threonine--tRNA ligase) (ThrRS) {Arabidopsis thaliana}
          Length = 709

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 24  GEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRN 73
           G+K +L  +    P  Y F  L   +YN LM+  KN Y   G   ++  N
Sbjct: 321 GQKQELFFSHQLSPGSYFFLPLGTRVYNRLMDFIKNQYWHRGYTEVITPN 370


>At4g31680.1 68417.m04498 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 [Brassica
           oleracea var. botrytis] GI:3170424; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 462

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 32  ASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGL 66
           +SAD  NC+   V +  I NDL+   +++  +NGL
Sbjct: 142 SSADL-NCFSQSVTHSNISNDLVTLPRDFAKRNGL 175


>At3g54710.1 68416.m06053 expressed protein
          Length = 486

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 14  KGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQN 64
           KG N +  G  + VK P  S +     E  ++ D+I N+  ++  NY   N
Sbjct: 317 KGINYEEDGLLQSVKGPSRSLNFDTLEEETIVKDDISNESGDEKSNYEGDN 367


>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 766

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 12  VKKGFNVKSYGTGEKVKLPGASADRPNCYEFG 43
           +K GF  K Y +  KV++   S  RPNC E G
Sbjct: 703 MKPGFRFKYYSS--KVEVRRNSVTRPNCVECG 732


>At4g20940.1 68417.m03034 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat receptor-like protein kinase INRPK1 [Ipomoea nil]
           gi|14495542|gb|AAB36558
          Length = 977

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 109 GSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEF 164
           GS  S  N  V + ++D+  NH    + + L S+++      +DL   + E L  F
Sbjct: 521 GSLPSSMNDIVSLSSLDVSQNHFTGPLPSNLSSNIMAFNVSYNDLSGTVPENLKNF 576


>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 698

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 47  DEIYNDLMEKDKNYYTQN 64
           DE Y+DL  +DK+Y+T N
Sbjct: 583 DEEYDDLAMEDKSYWTDN 600


>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 717

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 47  DEIYNDLMEKDKNYYTQN 64
           DE Y+DL  +DK+Y+T N
Sbjct: 602 DEEYDDLAMEDKSYWTDN 619


>At3g11340.1 68416.m01379 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 447

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 156 DIDELLHEFESKCHRPILNCI 176
           D+ E+LH+  SKC  P  +C+
Sbjct: 73  DVIEILHDLNSKCVAPFGDCL 93


>At1g77020.1 68414.m08969 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|P39101 CAJ1
           protein [Saccharomyces cerevisiae]; contains Pfam
           profile PF00226 DnaJ domain
          Length = 379

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 58  KNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEER-VYDQVIEWFGSRRSIYN 116
           K YY +   +H  D+N+      EKFQV  E + V+     R  YD+  + F + +    
Sbjct: 24  KAYYIKARQVHP-DKNQGDPLAAEKFQVLGEAYQVLSDPVHREAYDRTGK-FSAPKETMV 81

Query: 117 QPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDND 156
            P  V  +       E  IG   ++ M +    S+  ++D
Sbjct: 82  DPTAVFALLFGSELFEDYIGHLAVASMASTQMASEIENSD 121


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,563,217
Number of Sequences: 28952
Number of extensions: 197659
Number of successful extensions: 488
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 12
length of query: 179
length of database: 12,070,560
effective HSP length: 77
effective length of query: 102
effective length of database: 9,841,256
effective search space: 1003808112
effective search space used: 1003808112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)