Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000924-TA|BGIBMGA000924-PA|IPR001063|Ribosomal protein
L22/L17
         (203 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    27   1.9  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.4  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.8  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   7.8  

>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 43  NKKIYPPQQIDEPTR--PAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKK 100
           N++  P   +  PT     FV H + + +    +   +   I+    DE LKQL    KK
Sbjct: 3   NQQSQPEFVLRAPTEFSEKFVRHLQESTETDTSRYMDMENYIQKRVQDE-LKQLQLRQKK 61

Query: 101 GALFVKEAVLEAQEMAIKDHNVEFKSNLWVAE 132
               ++E   ++    IKD      SNL  AE
Sbjct: 62  AIDAIQEEEWKSNAKTIKDSQGSLDSNLLSAE 93


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 88  DEALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGK 137
           D  L Q + ++      + E +  A E  IKD ++ F+S+L  A    GK
Sbjct: 189 DIGLDQETGLSVTAIPIITETLDHAHEQEIKDQSLRFESSLNEANELHGK 238


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 67  NIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKS 126
           +++Y       +AC   G     AL  LS + +    FV++  + AQ M +  HN +  S
Sbjct: 630 HVRYGSAIALGIACANSGSNA--ALDLLSRLVEDATDFVRQGAMIAQAMILTQHNDQLNS 687

Query: 127 NL 128
            +
Sbjct: 688 KV 689


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 48  PPQQIDEPTRPAFVCHQKTNIKYSPDKLWY 77
           PP+Q+D P  P F     + I  SP   +Y
Sbjct: 114 PPEQLDSPCYPHFDQDSSSVIYPSPPSTYY 143


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,042,713
Number of Sequences: 5004
Number of extensions: 44615
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 4
length of query: 203
length of database: 2,362,478
effective HSP length: 70
effective length of query: 133
effective length of database: 2,012,198
effective search space: 267622334
effective search space used: 267622334
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)