GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000924-TA|BGIBMGA000924-PA|IPR001063|Ribosomal protein
L22/L17
         (203 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   3.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.1  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.1  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 30  WTKATAPKSFIQNNKKIYPPQQIDEPTRPAFVCHQKTN 67
           W +    K   QN K+I    QID      F+  Q T+
Sbjct: 204 WFQNRRAKERKQNKKRIEEKSQIDNLFHNGFMQEQSTH 241


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 23   TNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPT 56
            T+S+  +W     P   ++     Y P   D+ T
Sbjct: 1214 TDSILASWKPPVEPNGIVEYYTVYYKPVSTDDKT 1247


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 117 IKDHNVEFKSNLW 129
           + DH  +F SN W
Sbjct: 261 LSDHGTQFISNTW 273


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 118 KDHNVEFKSNLWV 130
           K  NVE  +NLWV
Sbjct: 306 KQLNVEHAANLWV 318


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,396
Number of Sequences: 317
Number of extensions: 2352
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 203
length of database: 114,650
effective HSP length: 54
effective length of query: 149
effective length of database: 97,532
effective search space: 14532268
effective search space used: 14532268
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)