GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000924-TA|BGIBMGA000924-PA|IPR001063|Ribosomal protein
L22/L17
         (203 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0708 + 24477228-24477375,24477823-24477905,24478233-244783...    64   8e-11
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    30   1.1  
01_06_0509 - 29921224-29924589                                         29   2.0  
01_01_0451 + 3355782-3355823,3356410-3357222                           29   2.0  
06_03_1221 - 28514952-28518152                                         28   4.6  
07_01_0978 + 8262778-8262859,8262931-8263505                           28   6.0  

>01_05_0708 +
           24477228-24477375,24477823-24477905,24478233-24478391,
           24478882-24478992,24479098-24479164,24479269-24479537
          Length = 278

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 65  KTNIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEF 124
           K +IK SP K+  VA L+RGM V++AL QL    K+ A  V + +  A+  A  +H ++ 
Sbjct: 125 KKDIKQSPKKVNLVAKLVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANAAHNHGLD- 183

Query: 125 KSNLWVAESFSGKGMVFKGIRRHARGRLG 153
              L V E+F GKG+  K +  HA+GR G
Sbjct: 184 PDKLIVEEAFVGKGLYLKRLSYHAKGRCG 212


>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 35  APKSFIQNNKKIYPPQQIDEPTRPAFVCHQKTNIKYSP 72
           AP+S  +NN + YPP      + P  V H+     Y P
Sbjct: 309 APRSAHRNNLRTYPPPAFASSSNPGAVSHEPAIPSYPP 346


>01_06_0509 - 29921224-29924589
          Length = 1121

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 153  GEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNSY 203
            G+V Y Y    + L  GKPPTD          N L  W++Q  + KIT+ +
Sbjct: 991  GDV-YSYGVVLLELLTGKPPTD---SADFGEDNNLVGWVKQHTKLKITDVF 1037


>01_01_0451 + 3355782-3355823,3356410-3357222
          Length = 284

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/55 (29%), Positives = 21/55 (38%)

Query: 20  NFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRPAFVCHQKTNIKYSPDK 74
           NF  NS        +AP   + N     P  + DE   P F+      + Y PDK
Sbjct: 140 NFADNSTDANSGCTSAPSLMMSNGPATIPSDEKDELESPPFIVANGPAVLYQPDK 194


>06_03_1221 - 28514952-28518152
          Length = 1066

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 169 GKPPTDYYKRKPL----LPSNQLQDWLEQMRRRKITN 201
           G+ P D +  KPL    LPSNQ++  L+  R  K+TN
Sbjct: 241 GELPGDIFDVKPLQRLQLPSNQIEGRLDPERIAKLTN 277


>07_01_0978 + 8262778-8262859,8262931-8263505
          Length = 218

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/66 (27%), Positives = 24/66 (36%)

Query: 110 LEAQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRLGEVRYKYSHYFVRLEEG 169
           LE  E A+  H + F  ++       G+  V    RR  R R+GE         V     
Sbjct: 56  LEGHEAAVACHGLVFLQDVRCDARHEGRQAVLHQRRRGGRRRVGEGEAAVGFVVVMFSSS 115

Query: 170 KPPTDY 175
              TDY
Sbjct: 116 MEETDY 121


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,296,225
Number of Sequences: 37544
Number of extensions: 256174
Number of successful extensions: 475
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 6
length of query: 203
length of database: 14,793,348
effective HSP length: 79
effective length of query: 124
effective length of database: 11,827,372
effective search space: 1466594128
effective search space used: 1466594128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)