GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000924-TA|BGIBMGA000924-PA|IPR001063|Ribosomal protein
L22/L17
         (203 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45686| Best HMM Match : T-box (HMM E-Value=0)                      113   7e-26
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)                28   4.7  
SB_19391| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   27   8.2  

>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
          Length = 947

 Score =  113 bits (273), Expect = 7e-26
 Identities = 67/153 (43%), Positives = 93/153 (60%), Gaps = 8/153 (5%)

Query: 52  IDEPTRPAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLE 111
           + EP + + + H + +++  P K+  VA  IRG++V EA+KQ+ F  KK A  VKE + E
Sbjct: 74  VPEPEKQS-IHHCRRSVRSGPRKMNLVARQIRGLSVTEAIKQMEFSPKKAATTVKEVLQE 132

Query: 112 AQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRLGEVRYKYSHYFVRLEEGKP 171
           AQ  A +++ +E K NLWVAES+ GKG  FK +R HARGR G     YSHYF+ L EG P
Sbjct: 133 AQNTAQRNYGIEDKENLWVAESYVGKGKYFKKLRYHARGRFGIEHVHYSHYFLVLREG-P 191

Query: 172 PTDYYKRKPLLPSNQLQDWLEQMRR--RKITNS 202
                KR+ L    +    LE++RR  R+I NS
Sbjct: 192 LLGKNKRRRLRHMTE----LEEIRRHPRRIQNS 220


>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1312

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 58  PAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLE-AQEMA 116
           P    H+K   K  PD LW+V   +  ++ D   ++ +  N K  L +K        E  
Sbjct: 269 PGIPMHKKNYYKTKPDLLWFVG--VDKLSRDYVTQEKNDPNVKICLSMKNNETSIVSEQG 326

Query: 117 IKDHNVEFKSNLWVAES 133
           +K ++  +  +LW A+S
Sbjct: 327 VK-YDFVYDQSLWSADS 342


>SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 44  KKIYPPQQIDEPTRPAFVCHQKTNIKYSP 72
           KK    +QID+ ++  ++CH++ + KY+P
Sbjct: 653 KKTKIIKQIDDSSKLRYICHRRIHPKYTP 681


>SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)
          Length = 510

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 117 IKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRLGEV-RYKYSHYFVRLEEGKPPTDY 175
           IK     ++S+   A ++    +    +R HAR +LGE    K  HY + L+EG  P  Y
Sbjct: 378 IKKEITRYQSDPGQATAYMVGQLNLMRLREHARQQLGEAFNLKDFHYHL-LKEGSAPLSY 436


>SB_19391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 99  KKGALFVKEAVLEAQEMA-IKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRLGEVRY 157
           KK A  +   V E   MA + D N   + N W  E  +      +   R  RGR GEV  
Sbjct: 188 KKTATALSVEVSEEPSMAKVIDINRYSELNRWRKEYLAN----LREFHRSKRGRQGEVTV 243

Query: 158 KYSHYFVRLEEGKPPTDY 175
           +        EEGK   +Y
Sbjct: 244 EVGEGVTVYEEGKKKNEY 261


>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 89  EALKQLSFVNKKGALFVKEAVLEAQEMAIKDHN 121
           E L+Q    N  G   V +A+ EA EM   +HN
Sbjct: 308 ETLRQQQNNNSNGMNIVSQAMTEAVEMVTSEHN 340


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 167 EEGKPPTDYYKRKPLLPSNQLQ 188
           EE KPP ++ +R P++  N LQ
Sbjct: 462 EEDKPPKEFDQRLPIITENDLQ 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,426,394
Number of Sequences: 59808
Number of extensions: 306211
Number of successful extensions: 503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 8
length of query: 203
length of database: 16,821,457
effective HSP length: 79
effective length of query: 124
effective length of database: 12,096,625
effective search space: 1499981500
effective search space used: 1499981500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)