GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000924-TA|BGIBMGA000924-PA|IPR001063|Ribosomal protein
L22/L17
         (203 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012565-1|AAH12565.1|  206|Homo sapiens mitochondrial ribosomal...   174   2e-43
AK000601-1|BAA91282.1|  206|Homo sapiens protein ( Homo sapiens ...   174   2e-43
AB033102-1|BAA86590.1| 1068|Homo sapiens KIAA1276 protein protein.     38   0.032

>BC012565-1|AAH12565.1|  206|Homo sapiens mitochondrial ribosomal
           protein L22 protein.
          Length = 206

 Score =  174 bits (424), Expect = 2e-43
 Identities = 82/162 (50%), Positives = 111/162 (68%), Gaps = 3/162 (1%)

Query: 41  QNNKKIYPPQQIDEPTRPAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKK 100
           + NK +YPPQ   EP RPA + H +  IKYS DK+WY+A LIRGM++D+AL QL F +KK
Sbjct: 47  KKNKIVYPPQLPGEPRRPAEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKK 106

Query: 101 GALFVKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRLGEVRYKYS 160
           GA  +KE +LEAQ+MA++DHNVEF+SNL++AES SG+G   K IR H RGR G +   Y 
Sbjct: 107 GAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYC 166

Query: 161 HYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNS 202
           HYFV+L EG PP       P       +++++Q+R R I ++
Sbjct: 167 HYFVKLVEGPPPP---PEPPKTAVAHAKEYIQQLRSRTIVHT 205


>AK000601-1|BAA91282.1|  206|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20594 fis, clone KAT08731. ).
          Length = 206

 Score =  174 bits (424), Expect = 2e-43
 Identities = 82/162 (50%), Positives = 111/162 (68%), Gaps = 3/162 (1%)

Query: 41  QNNKKIYPPQQIDEPTRPAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKK 100
           + NK +YPPQ   EP RPA + H +  IKYS DK+WY+A LIRGM++D+AL QL F +KK
Sbjct: 47  KKNKIVYPPQLPGEPRRPAEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKK 106

Query: 101 GALFVKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRLGEVRYKYS 160
           GA  +KE +LEAQ+MA++DHNVEF+SNL++AES SG+G   K IR H RGR G +   Y 
Sbjct: 107 GAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYC 166

Query: 161 HYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNS 202
           HYFV+L EG PP       P       +++++Q+R R I ++
Sbjct: 167 HYFVKLVEGPPPP---PEPPKTAVAHAKEYIQQLRSRTIVHT 205


>AB033102-1|BAA86590.1| 1068|Homo sapiens KIAA1276 protein protein.
          Length = 1068

 Score = 37.5 bits (83), Expect = 0.032
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 88  DEALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRH 147
           +E L+++    ++    +K+ +++  E  +K H VE KS   V  S   +    K ++R 
Sbjct: 415 EEDLRKIKHQTEEEKKHLKDQLVKRLEDLVKKHTVEIKS---VRSSVEAER---KKLQRE 468

Query: 148 ARGRLGEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRR 197
              +L EVR K      +LEE K   +   +  LL   +L+++++Q + R
Sbjct: 469 VEAQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNKTR 518


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,549,017
Number of Sequences: 224733
Number of extensions: 1319594
Number of successful extensions: 2182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2180
Number of HSP's gapped (non-prelim): 3
length of query: 203
length of database: 73,234,838
effective HSP length: 86
effective length of query: 117
effective length of database: 53,907,800
effective search space: 6307212600
effective search space used: 6307212600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)