GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000924-TA|BGIBMGA000924-PA|IPR001063|Ribosomal protein
L22/L17
         (203 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070969-1|AAL48591.1|  233|Drosophila melanogaster RE06857p pro...   248   4e-66
AE014298-2476|AAF48662.2|  233|Drosophila melanogaster CG4742-PA...   248   4e-66
AE013599-317|AAM68910.1|  708|Drosophila melanogaster CG30384-PA...    33   0.36 
AF160929-1|AAD46869.1|  281|Drosophila melanogaster BcDNA.LD1215...    29   4.5  
AE014297-3187|AAN13913.2|  281|Drosophila melanogaster CG31289-P...    29   4.5  

>AY070969-1|AAL48591.1|  233|Drosophila melanogaster RE06857p
           protein.
          Length = 233

 Score =  248 bits (607), Expect = 4e-66
 Identities = 108/174 (62%), Positives = 138/174 (79%), Gaps = 2/174 (1%)

Query: 30  WTKAT-APKSFIQNNKKIYPPQQIDEPTRPAFVCHQKTNIKYSPDKLWYVACLIRGMTVD 88
           W K    P+ +++ NK ++PPQ+ DE  R A+VCH ++NIKYSPDK+WY+A  +RGM+VD
Sbjct: 60  WNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSNIKYSPDKMWYIAAFVRGMSVD 119

Query: 89  EALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRHA 148
           EALKQL+FV KKGA  VKE +LEAQ++A++ HNVE+KSNLW+AESF GKG VFKG+RRHA
Sbjct: 120 EALKQLNFVLKKGATDVKETILEAQQIAVERHNVEYKSNLWIAESFVGKGRVFKGVRRHA 179

Query: 149 RGRLGEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNS 202
           RGR G+V YK+ HYFVRLEEG+PP  YY ++P  P  Q + W+EQMR RKI NS
Sbjct: 180 RGRFGKVEYKHCHYFVRLEEGEPPQHYY-QEPQTPEQQYESWMEQMRSRKIINS 232


>AE014298-2476|AAF48662.2|  233|Drosophila melanogaster CG4742-PA
           protein.
          Length = 233

 Score =  248 bits (607), Expect = 4e-66
 Identities = 108/174 (62%), Positives = 138/174 (79%), Gaps = 2/174 (1%)

Query: 30  WTKAT-APKSFIQNNKKIYPPQQIDEPTRPAFVCHQKTNIKYSPDKLWYVACLIRGMTVD 88
           W K    P+ +++ NK ++PPQ+ DE  R A+VCH ++NIKYSPDK+WY+A  +RGM+VD
Sbjct: 60  WNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSNIKYSPDKMWYIAAFVRGMSVD 119

Query: 89  EALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRHA 148
           EALKQL+FV KKGA  VKE +LEAQ++A++ HNVE+KSNLW+AESF GKG VFKG+RRHA
Sbjct: 120 EALKQLNFVLKKGATDVKETILEAQQIAVERHNVEYKSNLWIAESFVGKGRVFKGVRRHA 179

Query: 149 RGRLGEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNS 202
           RGR G+V YK+ HYFVRLEEG+PP  YY ++P  P  Q + W+EQMR RKI NS
Sbjct: 180 RGRFGKVEYKHCHYFVRLEEGEPPQHYY-QEPQTPEQQYESWMEQMRSRKIINS 232


>AE013599-317|AAM68910.1|  708|Drosophila melanogaster CG30384-PA
           protein.
          Length = 708

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 6/48 (12%)

Query: 152 LGEVRYKYSHYFVRLEEGKPPTD--YYKRKPLLPSNQLQDWLEQMRRR 197
           L  +R + SH+ +R EEG+PP+D   Y  K     ++ + W++Q+RR+
Sbjct: 620 LSGLRLEISHFQLREEEGEPPSDGTDYNGK----ESEEKPWIQQLRRK 663


>AF160929-1|AAD46869.1|  281|Drosophila melanogaster BcDNA.LD12153
           protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 9   FVSNLKYNQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQ 50
           F   +K N+ +N HT  L     K   P+S ++  K+  PP+
Sbjct: 145 FYDKIKLNRLHNMHTLCLLDIKVKEPTPESLMRKRKEYMPPR 186


>AE014297-3187|AAN13913.2|  281|Drosophila melanogaster CG31289-PA
           protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 9   FVSNLKYNQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQ 50
           F   +K N+ +N HT  L     K   P+S ++  K+  PP+
Sbjct: 145 FYDKIKLNRLHNMHTLCLLDIKVKEPTPESLMRKRKEYMPPR 186


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,862,821
Number of Sequences: 52641
Number of extensions: 456066
Number of successful extensions: 849
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 5
length of query: 203
length of database: 24,830,863
effective HSP length: 81
effective length of query: 122
effective length of database: 20,566,942
effective search space: 2509166924
effective search space used: 2509166924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)