Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000924-TA|BGIBMGA000924-PA|IPR001063|Ribosomal protein
L22/L17
(203 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031633-4|CAA21022.1| 260|Caenorhabditis elegans Hypothetical ... 101 5e-22
L16621-8|AAA28228.1| 632|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z82057-5|CAB04861.3| 325|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z81142-10|CAB03512.3| 325|Caenorhabditis elegans Hypothetical p... 28 4.1
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 28 5.4
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr... 27 7.1
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 27 7.1
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st... 27 7.1
AL033514-25|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical... 27 7.1
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 27 7.1
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 27 7.1
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 27 7.1
>AL031633-4|CAA21022.1| 260|Caenorhabditis elegans Hypothetical
protein Y39A1A.6 protein.
Length = 260
Score = 101 bits (241), Expect = 5e-22
Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 36 PKSFIQNNKKIYPPQQIDEPT---RPAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALK 92
P+ + NK ++PP I T +P V H K ++ +SP ++W L+ M VDEA+
Sbjct: 90 PEKWEYYNKVVWPPNYIVPETGLPKPKEVFHCKESVHFSPKRMWAACQLVWKMNVDEAIT 149
Query: 93 QLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRL 152
QL K + + + +A+ A + ++E+ S ++VA++F + + KG RRHA
Sbjct: 150 QLDMQQLKACNLLMDTIKKAKSRAADEFHIEYPSQMYVADAFPVQSNIVKGARRHAHDNW 209
Query: 153 GEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNS 202
+RY+Y H FVRLEEG P + + + ++ +R R + S
Sbjct: 210 NTIRYRYIHIFVRLEEGPAPQQKQRHPQKNGWDHMDEYYNYLRSRTVKYS 259
>L16621-8|AAA28228.1| 632|Caenorhabditis elegans Hypothetical
protein ZK688.2 protein.
Length = 632
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 147 HARGRLGEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQ 188
H + R E++YKYS Y+V + T ++K L+ S+ Q
Sbjct: 166 HEKDRFDEIQYKYSKYWVPFQWAFSLTYEARKKGLIESDYYQ 207
>Z82057-5|CAB04861.3| 325|Caenorhabditis elegans Hypothetical
protein ZK1037.11 protein.
Length = 325
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 70 YSPDKLWYVACLIRGMTVDEALKQLSFV 97
Y P+K WYVAC + L Q+S++
Sbjct: 250 YYPEKFWYVACKVWDCYFTAVLIQVSYL 277
>Z81142-10|CAB03512.3| 325|Caenorhabditis elegans Hypothetical
protein ZK1037.11 protein.
Length = 325
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 70 YSPDKLWYVACLIRGMTVDEALKQLSFV 97
Y P+K WYVAC + L Q+S++
Sbjct: 250 YYPEKFWYVACKVWDCYFTAVLIQVSYL 277
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 105 VKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGKGMV-FKGIRRHARGRLGEVRYKYSHYF 163
+ EA+++ E + +N + + W+A +G+V +K IR R E++ K+ F
Sbjct: 438 IAEALIKFAESRVSKNNQVVRQSAWLAAGSVVRGIVDYKNIRPLVREDKRELKEKFLRVF 497
Query: 164 VR 165
++
Sbjct: 498 MQ 499
>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
protein.
Length = 1613
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 105 VKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGKGMV-FKGIRRHARGRLGEVRYKYSHYF 163
+ EA+++ E + +N+ + W+A +G+V +K IR R E++ K+ F
Sbjct: 436 IAEALIKFAESRVAKNNLVVRQAAWLAAGSVVRGIVDYKNIRPLVREDKRELKEKFLRVF 495
Query: 164 VR 165
++
Sbjct: 496 MQ 497
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 16 NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 58
+Q N+ +++ +H T P +QN K PPQ D+ T P
Sbjct: 41 HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 82
>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2 protein.
Length = 1613
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 105 VKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGKGMV-FKGIRRHARGRLGEVRYKYSHYF 163
+ EA+++ E + +N+ + W+A +G+V +K IR R E++ K+ F
Sbjct: 436 IAEALIKFAESRVAKNNLVVRQAAWLAAGSVVRGIVDYKNIRPLVREDKRELKEKFLRVF 495
Query: 164 VR 165
++
Sbjct: 496 MQ 497
>AL033514-25|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
protein Y75B8A.24 protein.
Length = 2121
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 9 FVSNLKYNQCNNFHTNSLHLAWT--KATAPKSFIQNNKKIYPPQQIDEPTRPAFVCH 63
F S KY + + L WT A AP+ F++ +K+ + DEPT A V H
Sbjct: 891 FSSFFKYIEDKTMRKDKSGL-WTCMLAAAPRIFLEWCEKMMKRRDNDEPTEEALVWH 946
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear
receptor NHR-46 protein.
Length = 525
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 16 NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 58
+Q N+ +++ +H T P +QN K PPQ D+ T P
Sbjct: 38 HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 79
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear
receptor NHR-46 protein.
Length = 534
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 16 NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 58
+Q N+ +++ +H T P +QN K PPQ D+ T P
Sbjct: 47 HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 88
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear
receptor NHR-46 protein.
Length = 527
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 16 NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 58
+Q N+ +++ +H T P +QN K PPQ D+ T P
Sbjct: 40 HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 81
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.135 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,547,804
Number of Sequences: 27539
Number of extensions: 237473
Number of successful extensions: 440
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 12
length of query: 203
length of database: 12,573,161
effective HSP length: 78
effective length of query: 125
effective length of database: 10,425,119
effective search space: 1303139875
effective search space used: 1303139875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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