GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000924-TA|BGIBMGA000924-PA|IPR001063|Ribosomal protein
L22/L17
         (203 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   1.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   1.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.5  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   4.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 181 LLPSNQLQDWLEQMRRRKITNSY 203
           L P N+LQ W E +  + I   Y
Sbjct: 94  LYPPNKLQQWNEDLNWQPIATKY 116


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 181 LLPSNQLQDWLEQMRRRKITNSY 203
           L P N+LQ W E +  + I   Y
Sbjct: 109 LYPPNKLQQWNEDLNWQPIATKY 131


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 97  VNKKGALFVKEAVLEAQEMAIKDHNVEFKSNLWVAESF 134
           VN   AL VK  +  +Q + +   N    +NLWV +S+
Sbjct: 44  VNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLWVEQSW 81


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 3   NPFKNIFVSNLKYNQCNNFHTNSLH 27
           NP  N +  N  YN  N  + N L+
Sbjct: 86  NPLSNNYNYNNNYNNYNKHNYNKLY 110


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 9   FVSNLKYNQCNNFHTNSLHLAWTKATAPKSFIQ 41
           + SNLK ++C+ + +N   +     T  + +++
Sbjct: 144 YKSNLKCDKCSTYQSNGEEVCLENCTGYQQYLR 176


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 31  TKATAPKSFIQNNKKIYPPQQIDE 54
           T  T P +  QN     PP Q+DE
Sbjct: 673 TTTTTPNT-TQNASATTPPPQVDE 695


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,456
Number of Sequences: 429
Number of extensions: 3205
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 203
length of database: 140,377
effective HSP length: 55
effective length of query: 148
effective length of database: 116,782
effective search space: 17283736
effective search space used: 17283736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)