GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000924-TA|BGIBMGA000924-PA|IPR001063|Ribosomal protein
L22/L17
         (203 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28360.1 68417.m04059 ribosomal protein L22 family  protein         64   6e-11
At1g52370.1 68414.m05910 ribosomal protein L22 family  protein s...    63   1e-10
At2g22610.1 68415.m02680 kinesin motor protein-related                 29   2.9  
At3g45800.1 68416.m04957 hypothetical protein                          28   3.8  
At3g61035.1 68416.m06829 cytochrome P450 family protein similar ...    27   8.8  
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ...    27   8.8  

>At4g28360.1 68417.m04059 ribosomal protein L22 family  protein
          Length = 271

 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 1/105 (0%)

Query: 67  NIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKS 126
           +IK SP K+  VA L+RGM V++AL QL    K+ A  V   +  A+  A  +H ++   
Sbjct: 113 SIKQSPKKVNLVAALVRGMRVEDALIQLQVTVKRAAQTVYRVIHAARANATHNHGLD-PD 171

Query: 127 NLWVAESFSGKGMVFKGIRRHARGRLGEVRYKYSHYFVRLEEGKP 171
            L VAE+F GKG+  K +  HA+GR G +        V + E  P
Sbjct: 172 RLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTP 216


>At1g52370.1 68414.m05910 ribosomal protein L22 family  protein
           similar to GB:Z67753 from [Odontella sinensis]
          Length = 269

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 67  NIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKS 126
           +IK SP K+  VA L+RGM V++AL QL    K+ +  V   +  A+  A  +H ++   
Sbjct: 112 SIKQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLD-PD 170

Query: 127 NLWVAESFSGKGMVFKGIRRHARGRLG 153
            L VAE+F GKG+  K +  HA+GR G
Sbjct: 171 RLLVAEAFVGKGLFGKKVAYHAKGRSG 197


>At2g22610.1 68415.m02680 kinesin motor protein-related 
          Length = 1093

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 23  TNSLHLAWTKATAP-----KSFIQNNKKIYPPQQIDEPTRPAFVCHQKTNIKYSPDK 74
           TN  H AW   T+      K  ++ N KIY  + +D+       C +    KY  DK
Sbjct: 292 TNECHEAWMSLTSANEQLEKVMMELNNKIYQARSLDQTVITQADCLKSITRKYENDK 348


>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 48  PPQQIDEPTRPAFVCHQKTNIKYSPDKLWYV--ACLIRGMTVDEALKQL 94
           P + +DEP+R  ++C    N+  + DK+  +   C+ + M+++E +  L
Sbjct: 98  PSKAMDEPSRHNYLCSISHNVSETIDKVKNLIETCIYKYMSLEETVTYL 146


>At3g61035.1 68416.m06829 cytochrome P450 family protein similar to
           Cytochrome P450 76C2 (SP:O64637) [Arabidopsis thaliana]
          Length = 340

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 34  TAPKSFIQNNKKIYPPQQIDEPTRPAFVCHQKTNIKYSPDKLWYVACLIRGMTVD 88
           T  K+F+    + +  ++++E  R   +   K   + SP  L   AC I  + VD
Sbjct: 126 TGDKTFLTGASQSHEVRKVEESERTCNISLSKEANEASPSTLLVRACFITSLNVD 180


>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 681

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 154 EVRYKYSHYFVRLEEGKPPTD 174
           +VRYK+  +F+R+ +GK  +D
Sbjct: 521 KVRYKHDSHFLRIRDGKKASD 541


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,240,555
Number of Sequences: 28952
Number of extensions: 221280
Number of successful extensions: 486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 6
length of query: 203
length of database: 12,070,560
effective HSP length: 78
effective length of query: 125
effective length of database: 9,812,304
effective search space: 1226538000
effective search space used: 1226538000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)