Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000923-TA|BGIBMGA000923-PA|IPR004205|UcrQ
(82 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81538-2|CAB04384.1| 90|Caenorhabditis elegans Hypothetical pr... 63 2e-11
U39652-3|AAA80402.1| 90|Caenorhabditis elegans Hypothetical pr... 62 4e-11
Z50873-3|CAA90761.4| 531|Caenorhabditis elegans Hypothetical pr... 28 0.68
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 26 3.6
Z92831-8|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 26 3.6
Z81066-7|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 26 3.6
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 26 3.6
AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical ... 26 3.6
AF106573-5|AAF02104.2| 358|Caenorhabditis elegans Seven tm rece... 25 8.3
>Z81538-2|CAB04384.1| 90|Caenorhabditis elegans Hypothetical
protein F45H10.2 protein.
Length = 90
Score = 63.3 bits (147), Expect = 2e-11
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 1 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVVPPFIIGYLI 59
MGKHFG L K+ G + ++ +EQ+AY G F+ + + + +P I YL+
Sbjct: 8 MGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVKTFKTYVWDQWYYYIPQTIGAYLL 67
Query: 60 YEGVEREHHRLSRKNPADFENDQ 82
Y+ ++ + +RKNPADF NDQ
Sbjct: 68 YDWAKKTNVAANRKNPADFANDQ 90
>U39652-3|AAA80402.1| 90|Caenorhabditis elegans Hypothetical
protein R07E4.3 protein.
Length = 90
Score = 62.1 bits (144), Expect = 4e-11
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 1 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVVPPFIIGYLI 59
MGKHFG L K+ G + ++ +EQ+AY G F+ + + + +P I YL+
Sbjct: 8 MGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVRTFKTYVWDQWYYYIPQTIGAYLL 67
Query: 60 YEGVEREHHRLSRKNPADFENDQ 82
Y+ ++ + +RKNPADF ND+
Sbjct: 68 YDWAKKTNVAANRKNPADFANDE 90
>Z50873-3|CAA90761.4| 531|Caenorhabditis elegans Hypothetical
protein F17E5.2 protein.
Length = 531
Score = 28.3 bits (60), Expect = 0.68
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 32 SNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVERE 66
+ G ++R + KV+P I Y++YE V ++
Sbjct: 491 TEGFTGLYRGITPNFMKVIPAVSISYVVYEKVRKQ 525
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
H05L14.2 protein.
Length = 2162
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 33 NGIPNIFRRFRESVFKVVPPFIIGYLI 59
+G+ N + RF + + V PFI G I
Sbjct: 1465 DGVENFYERFEKEILPEVLPFISGRFI 1491
>Z92831-8|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 19 ISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSR 72
++ ++RA GA SNG + + +V K PP + L +R + L R
Sbjct: 190 MALEDERAAFGASSNGAVGVVKEGNLNVLKSDPPTLFDNLKSSSAKRRYCILRR 243
>Z81066-7|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 19 ISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSR 72
++ ++RA GA SNG + + +V K PP + L +R + L R
Sbjct: 190 MALEDERAAFGASSNGAVGVVKEGNLNVLKSDPPTLFDNLKSSSAKRRYCILRR 243
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 33 NGIPNIFRRFRESVFKVVPPFIIGYLI 59
+G+ N + RF + + V PFI G I
Sbjct: 1465 DGVENFYERFEKEILPEVLPFISGRFI 1491
>AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical
protein ZC190.8 protein.
Length = 227
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 35 IPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSRKNPADFENDQ 82
I +F FR + ++ FI+GY ++ RLS ++ NDQ
Sbjct: 20 IIGVFLIFRTAFIFIITGFILGYCLHVKDPPSDKRLSPESSKRNSNDQ 67
>AF106573-5|AAF02104.2| 358|Caenorhabditis elegans Seven tm
receptor protein 79 protein.
Length = 358
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 19 ISAHEQRAYAGAI-SNGIPNIFRRFRESVFKVVPPFIIGYLIYEG 62
+S + Q A+ + SN N+F RFR+ +F V + G+ + G
Sbjct: 110 LSLNAQFAFRWIVMSNSGKNLFWRFRKEIFLNVLLGVTGFYSFSG 154
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.142 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,758
Number of Sequences: 27539
Number of extensions: 70588
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 9
length of query: 82
length of database: 12,573,161
effective HSP length: 62
effective length of query: 20
effective length of database: 10,865,743
effective search space: 217314860
effective search space used: 217314860
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)
- SilkBase 1999-2023 -