GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000923-TA|BGIBMGA000923-PA|IPR004205|UcrQ
         (82 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0691 + 23552437-23552914,23555168-23555953,23556045-235561...    27   1.9  
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103...    27   2.5  
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991...    27   2.5  
01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088...    27   2.5  
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272...    26   3.3  
02_01_0763 - 5665010-5665202,5665285-5665375,5665460-5666245,566...    26   3.3  
03_01_0644 - 4719954-4720022,4720445-4720912,4721009-4721312,472...    26   4.4  
03_02_0614 + 9863622-9863675,9864353-9864604,9865125-9865268,986...    25   5.8  

>06_03_0691 +
           23552437-23552914,23555168-23555953,23556045-23556135,
           23556214-23556406
          Length = 515

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 34  GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 65
           G+   ++    ++ KVVP   I YL+YE +++
Sbjct: 479 GVSGFYKGILPNLLKVVPAASITYLVYEAMKK 510


>12_02_0979 -
           25009721-25009975,25010058-25010127,25010216-25010381,
           25010501-25010651,25010843-25010890,25011172-25011225,
           25011400-25011513,25012666-25012782,25012899-25012991,
           25013085-25013123,25013990-25014055
          Length = 390

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 16  TYKISAHEQRAYAGAISNGIPNIFRRFRESVFKV 49
           TYK+SAH +  Y    +     I RRF+   F+V
Sbjct: 323 TYKLSAHLRHNYLTVFTIAALEILRRFQWVFFRV 356


>01_05_0099 -
           18098169-18098390,18098878-18098972,18099063-18099131,
           18099277-18099352,18101412-18101524,18104137-18104185,
           18104540-18104572,18105446-18105552,18106892-18106990,
           18107122-18107203
          Length = 314

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 34  GIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRL 70
           GIP  +R    ++ +  P  +I +  YE + R  H+L
Sbjct: 275 GIPGFYRGCATNLLRTTPNAVITFTSYEMINRLMHQL 311


>01_03_0246 -
           14207899-14208052,14208132-14208206,14208682-14208801,
           14208905-14208981,14209204-14209285,14209439-14209485,
           14209561-14209681,14210188-14210235,14210478-14210569,
           14211001-14211057,14211203-14211273,14211376-14211493,
           14211574-14211621
          Length = 369

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 53  FIIGYLIYEGVEREHHRLSRKNP 75
           F+IGYL++ G  ++ H + +K+P
Sbjct: 251 FVIGYLVFRGANKQKH-VFKKSP 272


>09_04_0608 +
           18924648-18924899,18926341-18926435,18926903-18927236,
           18927345-18927582,18927813-18928069
          Length = 391

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 13  GLVTYKISAHEQRAYAGAISN-GIPNIFRRFRESVFKVVPPFIIGYLIYE 61
           G +  K   H   A A  I   G+P ++R +  S  KV+P   I ++ YE
Sbjct: 327 GALQGKCPPHMIAALAEVIQEEGLPGLYRGWGASCLKVMPNSGITWMFYE 376


>02_01_0763 -
           5665010-5665202,5665285-5665375,5665460-5666245,
           5667745-5668225
          Length = 516

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 34  GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 65
           GI   ++    ++ KVVP   I YL+YE +++
Sbjct: 480 GISGFYKGLVPNLLKVVPAASITYLVYETMKK 511


>03_01_0644 -
           4719954-4720022,4720445-4720912,4721009-4721312,
           4722321-4722745
          Length = 421

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 11  IRGLVTYKISAHEQRAYAGAIS----NGIPNIFRRFRESVFKVVPPFIIGYLIYE 61
           +R  +  ++ A    A+A  +      G+P ++     S+ +V+P   I Y +YE
Sbjct: 358 VRRQLQMQVKATRMNAFATCLKIVDQGGVPALYAGLIPSLLQVLPSASISYFVYE 412


>03_02_0614 +
           9863622-9863675,9864353-9864604,9865125-9865268,
           9865350-9866024,9866117-9866317,9866446-9866646
          Length = 508

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 6   GELAKIRGLVTYKISAHEQRAYAGAISNGIPNIF 39
           G+L +   + T +I  H+ RA+  AI  G P IF
Sbjct: 106 GQLNEGGEVTTKQIGVHDDRAHKLAIEPGSPYIF 139


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.142    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,366
Number of Sequences: 37544
Number of extensions: 76835
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 9
length of query: 82
length of database: 14,793,348
effective HSP length: 61
effective length of query: 21
effective length of database: 12,503,164
effective search space: 262566444
effective search space used: 262566444
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)