GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000923-TA|BGIBMGA000923-PA|IPR004205|UcrQ
         (82 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)                 25   8.4  
SB_31999| Best HMM Match : Utp14 (HMM E-Value=1.6)                     25   8.4  
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.4  
SB_18432| Best HMM Match : VirB3 (HMM E-Value=6.3)                     25   8.4  

>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
          Length = 885

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 46  VFKVVPPFIIGYLIYEGVEREHHRL 70
           +F +V  F++ + IY+ V R HHRL
Sbjct: 126 LFLMVANFVLSFKIYQVV-RRHHRL 149


>SB_31999| Best HMM Match : Utp14 (HMM E-Value=1.6)
          Length = 836

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 19  ISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGY 57
           +  HE R Y G       N    F E + + +PP   G+
Sbjct: 306 LGRHEGRPYEGYPERHFDNRVTGFNEGIHEPIPPLNSGF 344


>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 33  NGIPNIFRRFRESVFKVVPPFIIGYLIYEGV 63
           +G   ++R    +  KV P   I Y++YE +
Sbjct: 381 DGFKGLYRGLAPNFLKVAPAVSISYVVYENL 411


>SB_18432| Best HMM Match : VirB3 (HMM E-Value=6.3)
          Length = 179

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 46 VFKVVPPFIIGYLIYEGVEREHHRL 70
          +F +V  F++ + IY+ V R HHRL
Sbjct: 44 LFLMVANFVLSFKIYQVV-RRHHRL 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.142    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,996
Number of Sequences: 59808
Number of extensions: 88635
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 4
length of query: 82
length of database: 16,821,457
effective HSP length: 60
effective length of query: 22
effective length of database: 13,232,977
effective search space: 291125494
effective search space used: 291125494
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)