GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000923-TA|BGIBMGA000923-PA|IPR004205|UcrQ
         (82 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical pr...    63   2e-11
U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical pr...    62   4e-11
Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical pr...    28   0.68 
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr...    26   3.6  
Z92831-8|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    26   3.6  
Z81066-7|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    26   3.6  
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p...    26   3.6  
AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical ...    26   3.6  
AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm rece...    25   8.3  

>Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical
          protein F45H10.2 protein.
          Length = 90

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 1  MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVVPPFIIGYLI 59
          MGKHFG L K+ G   + ++ +EQ+AY G         F+ +  +  +  +P  I  YL+
Sbjct: 8  MGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVKTFKTYVWDQWYYYIPQTIGAYLL 67

Query: 60 YEGVEREHHRLSRKNPADFENDQ 82
          Y+  ++ +   +RKNPADF NDQ
Sbjct: 68 YDWAKKTNVAANRKNPADFANDQ 90


>U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical
          protein R07E4.3 protein.
          Length = 90

 Score = 62.1 bits (144), Expect = 4e-11
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 1  MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVVPPFIIGYLI 59
          MGKHFG L K+ G   + ++ +EQ+AY G         F+ +  +  +  +P  I  YL+
Sbjct: 8  MGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVRTFKTYVWDQWYYYIPQTIGAYLL 67

Query: 60 YEGVEREHHRLSRKNPADFENDQ 82
          Y+  ++ +   +RKNPADF ND+
Sbjct: 68 YDWAKKTNVAANRKNPADFANDE 90


>Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical
           protein F17E5.2 protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 32  SNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVERE 66
           + G   ++R    +  KV+P   I Y++YE V ++
Sbjct: 491 TEGFTGLYRGITPNFMKVIPAVSISYVVYEKVRKQ 525


>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
            H05L14.2 protein.
          Length = 2162

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 33   NGIPNIFRRFRESVFKVVPPFIIGYLI 59
            +G+ N + RF + +   V PFI G  I
Sbjct: 1465 DGVENFYERFEKEILPEVLPFISGRFI 1491


>Z92831-8|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 19  ISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSR 72
           ++  ++RA  GA SNG   + +    +V K  PP +   L     +R +  L R
Sbjct: 190 MALEDERAAFGASSNGAVGVVKEGNLNVLKSDPPTLFDNLKSSSAKRRYCILRR 243


>Z81066-7|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 19  ISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSR 72
           ++  ++RA  GA SNG   + +    +V K  PP +   L     +R +  L R
Sbjct: 190 MALEDERAAFGASSNGAVGVVKEGNLNVLKSDPPTLFDNLKSSSAKRRYCILRR 243


>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
            protein H05L14.2 protein.
          Length = 2162

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 33   NGIPNIFRRFRESVFKVVPPFIIGYLI 59
            +G+ N + RF + +   V PFI G  I
Sbjct: 1465 DGVENFYERFEKEILPEVLPFISGRFI 1491


>AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical
          protein ZC190.8 protein.
          Length = 227

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 35 IPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSRKNPADFENDQ 82
          I  +F  FR +   ++  FI+GY ++        RLS ++     NDQ
Sbjct: 20 IIGVFLIFRTAFIFIITGFILGYCLHVKDPPSDKRLSPESSKRNSNDQ 67


>AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm
           receptor protein 79 protein.
          Length = 358

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 19  ISAHEQRAYAGAI-SNGIPNIFRRFRESVFKVVPPFIIGYLIYEG 62
           +S + Q A+   + SN   N+F RFR+ +F  V   + G+  + G
Sbjct: 110 LSLNAQFAFRWIVMSNSGKNLFWRFRKEIFLNVLLGVTGFYSFSG 154


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.142    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,758
Number of Sequences: 27539
Number of extensions: 70588
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 9
length of query: 82
length of database: 12,573,161
effective HSP length: 62
effective length of query: 20
effective length of database: 10,865,743
effective search space: 217314860
effective search space used: 217314860
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)