GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000922-TA|BGIBMGA000922-PA|undefined
         (338 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   1.8  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    24   1.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.7  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 15  KFDYVDELIQMLKDPLNYGLFLDDYS-ANILLNELLVKKNYTQAADIAALIMLQEEYNND 73
           KF  V++ I+ +   LN G + +  S   I+ NE+LV  N  Q      L+M        
Sbjct: 194 KFCVVNQYIKQVCK-LNNGHYKNFLSQVEIIHNEILVTHNEIQTIFSVPLLMKIASQFVG 252

Query: 74  ILCSL--CQYSSYMFIKNYVEPE 94
           I CSL  C +  Y++    V P+
Sbjct: 253 IFCSLYFCIF-GYIYDDEMVVPQ 274


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory
          receptor candidate 25 protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 15 KFDYVDELIQMLKDPLNYGLFLDDYS-ANILLNELLVKKNYTQAADIAALIMLQEEYNND 73
          KF  V++ I+ +   LN G + +  S   I+ NE+LV  N  Q      L+M        
Sbjct: 19 KFCVVNQYIKQVCK-LNNGHYKNFLSQVEIIHNEILVTHNEIQTIFSVPLLMKIASQFVG 77

Query: 74 ILCSL--CQYSSYMFIKNYVEPE 94
          I CSL  C +  Y++    V P+
Sbjct: 78 IFCSLYFCIF-GYIYDDEMVVPQ 99


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 70  YNNDILCSLCQYSSYMFIKNYVEPEPAV 97
           YN D+ C+  Q   Y+ + N   P P +
Sbjct: 365 YNQDVSCTHYQNPEYISVVNPESPYPQI 392


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 325 DENYIPPEILP 335
           D NYI PE+ P
Sbjct: 446 DPNYISPEVFP 456


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 325 DENYIPPEILP 335
           D NYI PE+ P
Sbjct: 394 DPNYISPEVFP 404


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,612
Number of Sequences: 317
Number of extensions: 2589
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 338
length of database: 114,650
effective HSP length: 57
effective length of query: 281
effective length of database: 96,581
effective search space: 27139261
effective search space used: 27139261
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)