GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000922-TA|BGIBMGA000922-PA|undefined
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   1.2  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   5.0  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   5.0  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   8.8  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 224 QASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQSHRLDR-VKRVXXXXXXXX 282
           QA L + IE    + QE+++   +E     +K +QLKL ++  R  R  +R+        
Sbjct: 569 QAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKA 628

Query: 283 XXXXXXXXXWFFENEEKIDLQIEDKEKLVDKTQTKKK 319
                         E+++  + E K++ +++ + ++K
Sbjct: 629 LEAKRQEEARKKREEQRLKREQEKKQQELERQKREEK 665


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 35  FLDDYSANILLNELLVKKNYTQAADIAALIMLQEEYNNDILCSLCQYSSYM 85
           FL+D + N+++N       Y + A  + L  + E+Y+  + C+  QY+ Y+
Sbjct: 105 FLEDLNPNVIIN------TYLEFASASNLFSIIEQYDVVLDCTDNQYTRYL 149


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 54  YTQAADIAALIMLQEEYNNDILCSLCQYSSYMF-IKNYVEPEPAV 97
           Y QA DIA ++ L  EY++     +  +S+Y+   ++ ++PE  V
Sbjct: 79  YAQAFDIAEIVNLIREYSHKYHKHIPAFSAYIVAFRSVLQPEVQV 123


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 295 ENEEKIDLQIEDKEKLVDKTQTKKKVLTAIDENYIPPE 332
           +N+++   + +DKEK   K Q K KV+ +++E  +  E
Sbjct: 29  KNKKRKPEKKDDKEKSSKKVQKKNKVIESLNEMEVEME 66


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,200
Number of Sequences: 5004
Number of extensions: 53547
Number of successful extensions: 200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 4
length of query: 338
length of database: 2,362,478
effective HSP length: 73
effective length of query: 265
effective length of database: 1,997,186
effective search space: 529254290
effective search space used: 529254290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)