GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000922-TA|BGIBMGA000922-PA|undefined
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   31   1.3  
SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)                        29   4.1  
SB_51822| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  
SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.1  

>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 213 KIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQ 258
           +IE +    S Q S  D I++ + KT+++ +A QKELF+  E+ ++
Sbjct: 284 EIEKLRGDISKQFSDADEIQSELGKTKQEMLALQKELFLSGEREKR 329


>SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)
          Length = 742

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 301 DLQIEDKEKLVDKTQTKKKVLTAIDENYIPPEILPKRR 338
           D+  E K K++D+ + ++  L A+D + +P E  P+ R
Sbjct: 309 DMDPEKKRKMIDRLRKRRTSLDALDLHNVPSEKPPEAR 346


>SB_51822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 231 IENAINKT----QEKDVAAQKELFILWEKTRQLKLEEQSHRLDRVKRV 274
           +++A+N T    Q   V  +K++  LW++T   K + Q+H++ + K V
Sbjct: 273 LQSALNDTKTDVQVNSVKHEKDVLELWKETNNTKTDVQAHKVKQNKDV 320


>SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 121 DDHFDIKDRLKLAGKTLAWISEKTSNTLNNNLQLIGWLIYKKYDQL 166
           D++  I+D ++L G T ++I  + SNT  N++ LI  +  K +  L
Sbjct: 54  DENLRIRD-IRLNGSTASYILSRDSNTAYNDIDLIFGVEIKSHTHL 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,541,116
Number of Sequences: 59808
Number of extensions: 324675
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 17
length of query: 338
length of database: 16,821,457
effective HSP length: 83
effective length of query: 255
effective length of database: 11,857,393
effective search space: 3023635215
effective search space used: 3023635215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)