GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000922-TA|BGIBMGA000922-PA|undefined
         (338 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    31   0.061
DQ370043-1|ABD18604.1|  161|Anopheles gambiae putative TIL domai...    25   4.0  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   5.3  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 30.7 bits (66), Expect = 0.061
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 215 EIIPTKPSLQASLTDN--IENAINKTQEKDVAAQKEL--FILWEKTRQLKLEEQSHRLDR 270
           E++ T+  ++  LTD   ++  +++  ++    QKEL  +I  EK  Q KLEE   R+++
Sbjct: 865 EVVATEKRIKKVLTDTEEVDRKLSEALKQQKTLQKELESWIQKEKEAQEKLEEDGKRMEK 924


>DQ370043-1|ABD18604.1|  161|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 161

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 143 KTSNTLNNNLQLIGWLIYKKYDQLLATSEELCTNTKFRIYNEVI 186
           KT   LN+  + + + +Y+     L +SE L     FR Y E I
Sbjct: 50  KTCADLNDPPKCVRYSVYRDASASLDSSESLYMGNAFRNYYESI 93


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 213 KIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQSHRLDR 270
           KIE++  + +   +L D +E  + K + +  A  KEL  + +    ++   +S +  R
Sbjct: 879 KIELMKQEKAAHKTLVDQMEEEMAKARREVQALAKELAAIHQSIANIESRIESMKSKR 936


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,971
Number of Sequences: 2123
Number of extensions: 10254
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 3
length of query: 338
length of database: 516,269
effective HSP length: 64
effective length of query: 274
effective length of database: 380,397
effective search space: 104228778
effective search space used: 104228778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)