GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000922-TA|BGIBMGA000922-PA|undefined
         (338 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38150.1 68418.m04598 expressed protein                             34   0.12 
At3g53700.1 68416.m05931 pentatricopeptide (PPR) repeat-containi...    31   1.5  
At3g54080.1 68416.m05979 expressed protein                             30   2.5  
At3g51010.1 68416.m05585 expressed protein                             29   4.5  
At5g58610.1 68418.m07345 PHD finger transcription factor, putative     28   7.8  

>At5g38150.1 68418.m04598 expressed protein
          Length = 574

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 212 AKIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQSHRLDRV 271
           +K+E++       +SL +N   ++ K ++   AA+KE F+  E+    K E Q  +LD  
Sbjct: 326 SKLEVVSIAEERISSLAENFVGSLEKIKKSRNAAKKEEFLFKEEKTVTKAETQKTKLDID 385

Query: 272 KR 273
           K+
Sbjct: 386 KK 387


>At3g53700.1 68416.m05931 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 754

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 19  VDELIQMLKDPLNY-GLFLDDYSANILLNELLVKKNYTQAADIAALIMLQEEYNNDI 74
           V++ +  +++  N  G F D Y+ N L+N L    +   A +I   +MLQE Y+ D+
Sbjct: 275 VEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMD-VMLQEGYDPDV 330


>At3g54080.1 68416.m05979 expressed protein
          Length = 350

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 14  IKFDYVDELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYTQAADIAALIMLQEEYNND 73
           + FD +D L QML+D   + + ++ YS N+ L+   ++  +++     A ++L+E+   +
Sbjct: 205 LMFDQID-LSQMLRDEDEFMVAVNSYSGNVNLHSWSLEVRHSEYEHSWAPVLLEEQLRKE 263


>At3g51010.1 68416.m05585 expressed protein
          Length = 188

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 221 PSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQSHRLDRVKRV 274
           P    S  +  E ++ +   K    Q+  FIL EK ++  L +++ R  R+K+V
Sbjct: 102 PGQPISSNNPNEGSVKRRNAKKRIGQRRAFILSEKKKRQALVQEAKRKKRIKQV 155


>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
          Length = 1065

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 34  LFLDDYSANILLN-ELLVKKNYTQAADIAALIMLQEEYNNDILCSLCQYSSYMFI 87
           +FLDD  + +    E   K+   Q  D+  + + Q E  ND+ CS+C Y   + +
Sbjct: 656 IFLDDGRSLLECQVEAYKKRKKAQPPDMLKMKLRQGE--NDVFCSVCHYGGKLIL 708


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,911,448
Number of Sequences: 28952
Number of extensions: 246858
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 7
length of query: 338
length of database: 12,070,560
effective HSP length: 81
effective length of query: 257
effective length of database: 9,725,448
effective search space: 2499440136
effective search space used: 2499440136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)