Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000921-TA|BGIBMGA000921-PA|undefined
(196 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890... 69 2e-12
11_01_0222 + 1740828-1740830,1741109-1741218,1741304-1741487,174... 31 0.62
07_03_0708 - 20865786-20867153 29 1.9
12_01_0223 + 1708420-1708512,1708790-1709008,1709117-1709330,170... 29 2.5
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 29 2.5
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 28 4.4
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950... 28 5.8
>11_03_0008 +
8901817-8902146,8903058-8903120,8903226-8903321,
8903924-8903971,8904558-8904629,8905373-8905431,
8905582-8905672,8905749-8905886
Length = 298
Score = 69.3 bits (162), Expect = 2e-12
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 18/202 (8%)
Query: 3 LEHSLNCNDEKFCHRGSIT--LKSIRTGVPIIDQILFNEKHL-----EALKKLANEDEFY 55
LEH L F GS + LKS G + ++ F L +A KKL +ED FY
Sbjct: 84 LEHDLGAG---FVPAGSFSARLKSSAHGSQTLTKLRFTRNELTGDEKDAFKKLLDEDGFY 140
Query: 56 SIKTTITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVIAVNF-QVANSTQPL 114
SI+ + ++ +SS+KA+ L + I + ++AVN+ V T P
Sbjct: 141 SIRLLSNVLDPARKDYVVSSIKARCIPRESLDEHIVIH-MDGVNILAVNYGSVGGCTYPR 199
Query: 115 K-QATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYI 173
+ +++ NS L+ EQAP T S++ ++ + +SF AKYWMYI
Sbjct: 200 PVKMPSKWVFNSYTVLKTSEQAP--RTPSFVDQLIEAENGLGEVVKSPEKSFWAKYWMYI 257
Query: 174 VPVAIFVM--ISGATN-PEASA 192
+P+ + VM ++ A N PE A
Sbjct: 258 IPLGLIVMNAVTAAANMPEEQA 279
>11_01_0222 +
1740828-1740830,1741109-1741218,1741304-1741487,
1742159-1742344,1742631-1742849,1742958-1743171,
1743549-1743601,1743839-1743874
Length = 334
Score = 31.1 bits (67), Expect = 0.62
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 50 NEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENGLSDV--INAWILPNGAVIA----- 102
N + YS K GE +L S AQ +E+G+ + ++W+ V+A
Sbjct: 144 NSEGRYSSKPMPFLGETEVEVNFLGSTGAQEGVESGMESIKPQHSWMNRKRTVLAGEHKE 203
Query: 103 VNFQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAR 154
N AN Q + +++ +L+ + ++ I++A IQK + D R
Sbjct: 204 ENNNTANLDQSSEAKSDKKQLSEEDEMKSIQEAYAKAYYEAIQKRQEDEGKR 255
>07_03_0708 - 20865786-20867153
Length = 455
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 40 KHLEALKKLANEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENG 85
KH EA+++ + F S T G+ + SSV QA LENG
Sbjct: 42 KHSEAVRRDGHRLAFLSYAATAAAGKATTTGTNSSSVNVQAQLENG 87
>12_01_0223 +
1708420-1708512,1708790-1709008,1709117-1709330,
1709901-1710001
Length = 208
Score = 29.1 bits (62), Expect = 2.5
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 50 NEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENGLSDV--INAWILPNGAVIAVNF-- 105
N + YS K GE +L S AQ +E+G+ + +W+ V+
Sbjct: 14 NSEGRYSSKPMPFLGETEVEVNFLGSTGAQEGVESGMESIKPQPSWMNRKSTVLTGEHKG 73
Query: 106 QVANST---QPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAR 154
+++N+ Q + +++ +L+ K ++ I++A IQK + D + R
Sbjct: 74 EISNTADLDQSSEAKSDKKQLSEKDEMKSIQEAYAKAYYEAIQKRQEDEDKR 125
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 29.1 bits (62), Expect = 2.5
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
Query: 17 RGSITLKSIRTGVPIIDQILFNEKHLEALKKLANEDEFYSIKTTITTGENSKGTEYLSSV 76
R ++ L +I +P++ I + ED SI + + + + T+Y V
Sbjct: 672 RNTVLLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLV 731
Query: 77 KAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKLNSKFY 128
AQA + + D+ W P + + ++AT + L FY
Sbjct: 732 CAQAHRQELIQDLYKTWHDPQRGTV-TGGMIRELLISFRKATGQKPLRIIFY 782
>04_04_0468 -
25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 81 FLENGLSDVINAWILPNGAVIAVNF------QVANSTQPLKQATNEYKLNSKFYLRYIE 133
F +G+ D INAW +GA A +F ++++ QPL +A + L + + R E
Sbjct: 795 FFVDGILDEINAWSEHSGATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPE 853
>07_03_0419 -
17993478-17993777,17994045-17994195,17994799-17995036,
17995133-17995343,17995440-17995618,17995735-17995833,
17996646-17997531
Length = 687
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 83 ENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKLNSK 126
E G V LPNG +AV A+S+Q L + NE +L +K
Sbjct: 380 EGGFGSVYKGQ-LPNGLEVAVKRLAAHSSQGLVEFKNEIQLIAK 422
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,333,285
Number of Sequences: 37544
Number of extensions: 197752
Number of successful extensions: 470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 7
length of query: 196
length of database: 14,793,348
effective HSP length: 78
effective length of query: 118
effective length of database: 11,864,916
effective search space: 1400060088
effective search space used: 1400060088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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