GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000921-TA|BGIBMGA000921-PA|undefined
         (196 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40547| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   7e-14
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       30   1.1  
SB_16883| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_20139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_36633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)                   27   7.8  

>SB_40547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 29/52 (55%), Positives = 42/52 (80%)

Query: 132 IEQAPVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVPVAIFVMIS 183
           I   P+PDT +Y+Q+ME+++  +  G+ KDNRSFLAKYWMYIVP+ IF+++S
Sbjct: 59  ISNGPLPDTQTYVQRMEKEKRDQAGGKGKDNRSFLAKYWMYIVPIVIFMLMS 110


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 39  EKHLEALKKLANEDEFYSIKTTITTGE 65
           ++HL A +KLA+ED+ Y    T+ T E
Sbjct: 659 QRHLRAAEKLADEDQSYRAAITVVTDE 685


>SB_16883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 39  EKHLEALKKLANEDEFYSIKTTITTGENSKGTE-YLSSVKAQAFLENGLSDVINAWILPN 97
           EK L+    L  ++  Y+I+ TI+ GE  + TE + S    Q F+  G + +I   ++  
Sbjct: 58  EKPLDKRTYLTLDETGYTIRKTISQGEEVRKTESHFSPEDFQGFISEGSNLLIQRIMILK 117

Query: 98  GAVIAVNFQVANSTQPLKQATNEYK 122
           G    + F   +S   L  +T+ Y+
Sbjct: 118 GVPPDMTFLAFDSETNL--STSSYR 140


>SB_20139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 115 KQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEMKDNR 163
           + AT E + NS  YL Y+  +P P T   +      +  R + +   NR
Sbjct: 56  RPATQESQNNSYMYLSYVSVSPSPKTGYQVSSKFAHKPTRPQTDSSTNR 104


>SB_36633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 73  LSSVKAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQ 116
           L+S +A  F+EN +SDV     +P   V  +NF       P  Q
Sbjct: 63  LASFQAHLFVENIVSDVAKTCGIPENEVRQLNFYSEGDLTPYNQ 106


>SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 101 IAVNFQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEMK 160
           IA N +   S +  K A  +    +  +LR +   P P T + I+ + +D E R+  E K
Sbjct: 299 IAGNSEQDTSIKKTKTAKPKQSEAASDFLRDLLALPTPGTRNLIKHLHKDEEERKPKEEK 358


>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
          Length = 1003

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 42  LEALKKLANEDEFYSIKTTITTGE--NSKGTEYLSSVKAQAFL--ENGLSDVINAWILPN 97
           + +L K   E  F   K  +  G+  NS+  E   S   QA L  +  LS  +  W+L  
Sbjct: 1   MSSLAKALEERRFRQAKLLVQLGDDLNSRSKETGRSPLVQASLIEDEDLSYKVCHWLLQE 60

Query: 98  GAVIAV 103
           GA IAV
Sbjct: 61  GADIAV 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,291,106
Number of Sequences: 59808
Number of extensions: 235369
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 8
length of query: 196
length of database: 16,821,457
effective HSP length: 78
effective length of query: 118
effective length of database: 12,156,433
effective search space: 1434459094
effective search space used: 1434459094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)