Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000921-TA|BGIBMGA000921-PA|undefined
(196 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032637-7|CAA21610.1| 236|Caenorhabditis elegans Hypothetical ... 88 3e-18
U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical p... 32 0.24
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF098996-7|AAC68708.2| 382|Caenorhabditis elegans Serpentine re... 30 1.3
AF078783-5|AAC26922.1| 236|Caenorhabditis elegans Hypothetical ... 29 1.7
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical... 28 5.1
Z83223-3|CAB05717.2| 385|Caenorhabditis elegans Hypothetical pr... 27 6.7
U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical pr... 27 6.7
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 6.7
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 27 8.8
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 27 8.8
>AL032637-7|CAA21610.1| 236|Caenorhabditis elegans Hypothetical
protein Y43F8C.7 protein.
Length = 236
Score = 88.2 bits (209), Expect = 3e-18
Identities = 37/57 (64%), Positives = 46/57 (80%)
Query: 136 PVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVPVAIFVMISGATNPEASA 192
P PDTA+++QKMER++ A++ G DNRSFLAKYWMYIVPV +F +IS A NPEA A
Sbjct: 175 PTPDTAAFVQKMEREKRAKQHGADADNRSFLAKYWMYIVPVVLFAVISSAVNPEAGA 231
>U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical
protein K06C4.8 protein.
Length = 355
Score = 32.3 bits (70), Expect = 0.24
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 44 ALKKLANEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVIAV 103
A+ L N F+ K + TG G ++S + +L G+ +I ++P +
Sbjct: 155 AISILFNAPRFFEFKANLITGVIGFGLAHISKNEWYFYLYYGIRAIIFDALIPFSIIAVT 214
Query: 104 NFQVANSTQPLKQATNEYKL 123
N QV Q L+++ E KL
Sbjct: 215 NIQV---IQQLRKSNEERKL 231
>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical protein
ZK430.5 protein.
Length = 1276
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 107 VANSTQPLKQATNEY-KLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEMKDNRSF 165
V+ + + A+N+ L S+ + + + + +T S +QK A + E KDN
Sbjct: 1175 VSKTPKQKSLASNQILTLRSETMNQEVPRKAITETRSKVQKAPPHPTASQNEEEKDNLKR 1234
Query: 166 LAKYWMYIVPVAIFVMISGATNPEASAPAGR 196
K + + + F GA P + P+ R
Sbjct: 1235 TRKRKLLVSTIPNFCKEHGAKKPRTTRPSSR 1265
>AF098996-7|AAC68708.2| 382|Caenorhabditis elegans Serpentine
receptor, class w protein60 protein.
Length = 382
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 55 YSIKTTITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPL 114
Y I T + G + + L+ V+ AF+ +G+ +I A+ LP A+ V ++ + +
Sbjct: 201 YKIAHTYSVGRSEFMDKNLNFVEEYAFMSDGIPKMIAAFFLPILAIALVR-RLRQAAESR 259
Query: 115 KQATNEYKLNSKFYLRYI 132
K +N L + +R +
Sbjct: 260 KHLSNSKPLQTDKSIRMV 277
>AF078783-5|AAC26922.1| 236|Caenorhabditis elegans Hypothetical
protein H10E21.4 protein.
Length = 236
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 99 AVIAVNFQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDR 151
A I N + L A N+ KL+ K + ++ + PD Y Q+ + DR
Sbjct: 10 AAIGATVFAQNDSFDLVDANNDGKLSEKELITFMRKRGRPDGQEYFQRFDLDR 62
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 23 KSIRTGVPIIDQILFNEKHLEALKKLANEDEFYSIKTTI------TTGENSKGTEYLSSV 76
KSI TG + ++ F + + +A K ++ F ++K + T G + K +YL +
Sbjct: 637 KSIETGWDTLKEVFFRQINQDARTKKDHDPVFDALKEAVIEEAMLTHGWDDKAMDYLRVI 696
Query: 77 KAQAFLENGLSD 88
+ A + + D
Sbjct: 697 QLNAMEDRAVQD 708
>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
protein W03F11.4 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 HLEALKKLANEDEFYSIKTTITTGENSK 68
+L+ ++K ED SI TT TTG SK
Sbjct: 895 YLKCMRKEPKEDPTVSIATTTTTGPESK 922
>Z83223-3|CAB05717.2| 385|Caenorhabditis elegans Hypothetical
protein E01G4.5 protein.
Length = 385
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 3 LEHSLNCNDEKFCHRGSITLKSIRTGVPIIDQILFNEKHL-EALKKLANEDEFYSIKTTI 61
LEH+ +E+ C K++ G ++LF++K +++++ A E+++ S+ +
Sbjct: 135 LEHTFGVKNERICGPSHCLPKALAVG-----KLLFDKKRCPDSVERAALENKWQSVAKSD 189
Query: 62 TTGENSKGTEYLSSVK 77
T E+ K T L K
Sbjct: 190 ATDEH-KSTSELKMAK 204
>U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical
protein T20D4.9 protein.
Length = 459
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 20 ITLKSIRTGVPIIDQILFNEKHLEALKKLANEDEFYSIKTTI 61
+T+KS+ T I+D F E H E +KK N ++F + T+
Sbjct: 62 MTVKSLDTA--IVDMEYFFETHYEYIKKKNNSEKFSFMVETL 101
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 57 IKTTITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQ 116
I TT++ + T+ L+S AQ+ G+S V ++ +P G+ + + Q S QP +
Sbjct: 875 ICTTVSNTFGTSTTQGLTSSSAQSTASTGVSTVASSTTIPQGS-SSSSPQSPTSAQPAQS 933
Query: 117 AT 118
++
Sbjct: 934 SS 935
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 56 SIKTTITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPN 97
S+K + +N K T+YL+ A+ E L D+ + + PN
Sbjct: 1134 SVKNSAPDVDNKKATQYLAKTLAKLIGEKQLLDLATSELDPN 1175
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 20 ITLK-SIRTGVPIIDQILFNEKHLEALKKLANEDEFYSI 57
IT+K S +T PI+ + N +HLE ++++ + D S+
Sbjct: 95 ITVKNSTKTASPILKDFVKNYEHLENVRRVIHRDNSRSV 133
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 20 ITLK-SIRTGVPIIDQILFNEKHLEALKKLANEDEFYSI 57
IT+K S +T PI+ + N +HLE ++++ + D S+
Sbjct: 87 ITVKNSTKTASPILKDFVKNYEHLENVRRVIHRDNSRSV 125
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,838,583
Number of Sequences: 27539
Number of extensions: 194067
Number of successful extensions: 517
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 13
length of query: 196
length of database: 12,573,161
effective HSP length: 78
effective length of query: 118
effective length of database: 10,425,119
effective search space: 1230164042
effective search space used: 1230164042
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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