Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000920-TA|BGIBMGA000920-PA|IPR006875|Sarcoglycan complex
subunit protein
         (311 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden...    31   0.99 
At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)...    31   1.3  
At4g19060.1 68417.m02808 disease resistance protein-related cont...    29   4.0  
At1g15320.1 68414.m01833 hypothetical protein                          29   5.3  
At1g80120.1 68414.m09378 expressed protein contains Pfam profile...    28   7.0  
At1g29310.1 68414.m03583 protein transport protein sec61, putati...    28   7.0  
At1g08530.1 68414.m00944 expressed protein                             28   7.0  
At2g34250.1 68415.m04190 protein transport protein sec61, putati...    28   9.2  
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like...    28   9.2  

>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
           identical to SEUSS transcriptional co-regulator
           [Arabidopsis thaliana] gi|18033922|gb|AAL57277
          Length = 877

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 82  GIGPIKIMNGGI---QLQGQTWVVNNLVASTISTQPAHPITLHSHRNFTVLVSDPKHSEH 138
           G+GP+K+  G +   Q  GQ       +   + +    P  + + RN   +  +P+HSE 
Sbjct: 165 GVGPVKMEPGQVSNDQQHGQVQQQQQKMLRNLGSVKLEPQQIQAMRNLAQVKMEPQHSEQ 224

Query: 139 SKLL 142
           S  L
Sbjct: 225 SLFL 228


>At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)
           identical to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 850

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 203 PGSDLQLESLTRGLDLRAPQSIYFESRAGKIDV-TSHTDLKLNSIVGAIKIDAPNIVITN 261
           PG+  +L     GLD R    I++++ + +  V  ++ D  L+S +G +KI   N+V+ +
Sbjct: 49  PGNVFELGFFKPGLDSRWYLGIWYKAISKRTYVWVANRDTPLSSSIGTLKISDSNLVVLD 108

Query: 262 LKEAHVTEKPQRG--IRSMKVYQL 283
             +  V      G  +RS  V +L
Sbjct: 109 QSDTPVWSTNLTGGDVRSPLVAEL 132


>At4g19060.1 68417.m02808 disease resistance protein-related
           contains Pfam domain, PF00931: NB-ARC domain, a novel
           signalling motif found in plant resistance gene products
          Length = 383

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 184 GIGGLVVKTALQVPLVRAPPGSDLQLESLTRGLDLRAPQSIYFESRAGKIDVTSHTDL 241
           G GG V+ T+    L +A  G +  L+ L    D  +   IY ++   K+D  + T+L
Sbjct: 264 GFGGKVIMTSRDERLAKAIVGEEENLQRLFPRSDAESLWEIYIDAVPTKVDDAAATNL 321


>At1g15320.1 68414.m01833 hypothetical protein
          Length = 307

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 58  LMILVFLNIALT-LWIISALKLNMNGIGPIKIMNGGIQLQGQTWVVNNLVASTISTQPAH 116
           L  LV + I+L  LW+I  + L  +     +  N G +L      +    AS IS++ +H
Sbjct: 3   LQELVLVKISLVFLWLIGFVFLQRSEENGFEEPNNGEELSWDD--LEREAASNISSKRSH 60

Query: 117 PITLHSHRNFT 127
               H H +FT
Sbjct: 61  AERSHQHESFT 71


>At1g80120.1 68414.m09378 expressed protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 210

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 135 HSEHSKLLIKRDNIEFSGKMFHVRDSRGGDVFR 167
           H E   L +++ ++ F+G  F V D +G  VFR
Sbjct: 13  HGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFR 45


>At1g29310.1 68414.m03583 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 49  NLLYGILIFLMILVFLNIALTLWIISALKLNMNGIGPIKIM-NGGIQLQGQTWVVNNL 105
           NLL  +LIFL+++ F    + L + S       G  PIK+     + +  Q+ +V+NL
Sbjct: 247 NLLATVLIFLIVIYFQGFRVVLPVRSKSARGQQGSYPIKLFYTSNMPIILQSALVSNL 304


>At1g08530.1 68414.m00944 expressed protein
          Length = 257

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 197 PLVRAPPGSDLQLESLTRGLDLRAPQSIY 225
           PL+R+PP  DL   SL R   L+ P S+Y
Sbjct: 11  PLIRSPPFLDLSPTSLNR-FTLKIPASLY 38


>At2g34250.1 68415.m04190 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 49  NLLYGILIFLMILVFLNIALTLWIISALKLNMNGIGPIKIM-NGGIQLQGQTWVVNNL 105
           NLL  +LIFL+++ F    + L + S       G  PIK+     + +  Q+ +V+NL
Sbjct: 247 NLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNL 304


>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
           protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
           thaliana]
          Length = 359

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 54  ILIFLMILVFLNIALTLWIISALKLNMNGIGPIKIMNGGIQLQGQTWVVNNLVASTIS-T 112
           +L+FL+I + L  +  L I SALK    G   I   N    L  +T + N       S T
Sbjct: 5   LLLFLLIALLLQSSFLLEISSALK---EGKTCITNSNCDAGLHCETCIANTDFRPRCSRT 61

Query: 113 QPAHPIT 119
           QP +PIT
Sbjct: 62  QPINPIT 68


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,809,106
Number of Sequences: 28952
Number of extensions: 269417
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 9
length of query: 311
length of database: 12,070,560
effective HSP length: 81
effective length of query: 230
effective length of database: 9,725,448
effective search space: 2236853040
effective search space used: 2236853040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)