GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000920-TA|BGIBMGA000920-PA|IPR006875|Sarcoglycan complex
subunit protein
         (311 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    25   0.54 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   5.0  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.0  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 21  NAPTVNVGNENRTNHKCLPAIFFRGWR--RNLLYGILIFLMILVFLNIALTLWIISALKL 78
           N  T  +GN  R  H+       R +     LL+G+L +      +   L  W+   L L
Sbjct: 274 NVSTEVIGNILRLMHRRFEITALRLFTIDNKLLFGVLAYYSTTCDIATILDFWVRCVLSL 333

Query: 79  NMNGI-GPIKIMNG 91
           +   + G   IM+G
Sbjct: 334 HCAAVGGSANIMSG 347


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 52  YGILIFLMILVFLNIAL 68
           Y IL F  I+V+LN A+
Sbjct: 330 YNILYFCRIMVYLNSAI 346


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 272 QRGIRSMKVYQLCACATG 289
           +RG++   +Y+L  C TG
Sbjct: 61  ERGLKYYPIYKLDVCGTG 78


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,486
Number of Sequences: 317
Number of extensions: 2703
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 311
length of database: 114,650
effective HSP length: 57
effective length of query: 254
effective length of database: 96,581
effective search space: 24531574
effective search space used: 24531574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)