GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000920-TA|BGIBMGA000920-PA|IPR006875|Sarcoglycan complex
subunit protein
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   1.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   1.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   2.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.5  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   4.5  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/50 (22%), Positives = 27/50 (54%)

Query: 126 FTVLVSDPKHSEHSKLLIKRDNIEFSGKMFHVRDSRGGDVFRASKEEVRV 175
           F VL + P H + + + + RD ++F   + ++ +   G +F  S  ++++
Sbjct: 697 FIVLPTWPVHDKDNLVDLMRDTLDFCDMLINIFEEVNGFIFGLSDNDIKI 746


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 227 ESRAGKIDVTSHTDLKLNSIVGAIKIDAPNIVIT-NLKEAHVTEKPQRGIRSMKV 280
           E++     V   T +       A +  AP   +  NLKE+HV E P RG+  + +
Sbjct: 480 EAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENLKESHVNETPYRGLHDVNL 534


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 154  MFHVRDSRGGDVFRASKEEVRVYADTFAVDGIGGLVVKTALQVPLVRAPPGSDLQ--LES 211
            +F V    G ++  AS E +    D  + +    +V+   L   L    P +  +  LES
Sbjct: 2388 LFAVVSKSGQNMNEASAEAIEQLLDEISAESSEHMVICAKLYGALFSHLPDAQAKQLLES 2447

Query: 212  LTRGLDLRAPQSIYFESRAGKIDVTSHTDLKLNSIVGAI 250
                L++++  S+   + A K       +LKL+ IV +I
Sbjct: 2448 KVLSLEIQSEFSVLILNAAVKFGSQKIIELKLSDIVCSI 2486


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 105  LVASTISTQPAHPITLHSHRNFTV-LVSDPKHSEHSKLLIKR 145
            L+ +  +T+  HP T+  H NF + L  +P + E S+ +  R
Sbjct: 2057 LIVNEKTTEDGHPKTIKPHPNFRLFLTVNPVYGELSRAMRNR 2098


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 205 SDLQLESLTRGLDLRAPQSIYFESRAGKIDVTSHTDL 241
           S L+  S TR +DL AP S  F   A   D +S+  L
Sbjct: 530 STLRKASKTRIVDLSAPNSAVFSKNASGGDTSSNVSL 566


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,475
Number of Sequences: 5004
Number of extensions: 51551
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 5
length of query: 311
length of database: 2,362,478
effective HSP length: 73
effective length of query: 238
effective length of database: 1,997,186
effective search space: 475330268
effective search space used: 475330268
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)