GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000920-TA|BGIBMGA000920-PA|IPR006875|Sarcoglycan complex
subunit protein
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858           42   8e-04

>01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858
          Length = 275

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 104 NLVASTISTQPAHPITLHSHRNFTVLVSDPKHSEHSKLLIKRDNIEFSGKMFHV-RDSR- 161
           ++ +ST  T+  H I  H  R+   +  D  H       +  D    S   +HV RD+R 
Sbjct: 13  SVASSTQDTERYHTIFYHVSRDTRKVSYDFNHVSRDTHEVSCDTCRVSDDFYHVSRDTRK 72

Query: 162 -GGDVFRASKEEVRVYADTFAVDGIGGLVVKTALQVPLVRA-PPGSDLQLESLTRGLDLR 219
              D +  S++   V  DT+ V       ++  L++ L  A  P  D  LE L RG   R
Sbjct: 73  VSDDFYHVSRDTCEVSDDTYQVAATPSSAMRIILRIRLSPAWTPEEDACLERLARGYGFR 132


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,476,210
Number of Sequences: 37544
Number of extensions: 333941
Number of successful extensions: 663
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 1
length of query: 311
length of database: 14,793,348
effective HSP length: 82
effective length of query: 229
effective length of database: 11,714,740
effective search space: 2682675460
effective search space used: 2682675460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)