GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000920-TA|BGIBMGA000920-PA|IPR006875|Sarcoglycan complex
subunit protein
         (311 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25670| Best HMM Match : Sarcoglycan_1 (HMM E-Value=6.2e-06)         63   2e-10
SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)                  29   4.9  
SB_43958| Best HMM Match : Peptidase_M50 (HMM E-Value=5)               28   8.5  

>SB_25670| Best HMM Match : Sarcoglycan_1 (HMM E-Value=6.2e-06)
          Length = 436

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 193 ALQVPLVRAPPGSDLQLESLTRGLDLRAPQSIYFESRAGKIDVTSHTDLKLNSIVGAIKI 252
           ++Q   VR+PP   L LESLTR L L AP+ I  ++ AG I + S TD+ + S  G I +
Sbjct: 328 SVQTKAVRSPPKEHLTLESLTRQLHLNAPEGIQVKTVAGGISLQSLTDVNIRSKKGKITL 387

Query: 253 DAPNIVITNLKEAHVTEKPQRGIRSMKVYQLCACATGKLF 292
           DA +I++ N+       KP  G+ S    ++C    G +F
Sbjct: 388 DAQSIMLKNIP----LSKPASGV-SSDACEVCVSQDGSIF 422


>SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)
          Length = 633

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 153 KMFHVRDSRGGDVFRASKEEV-RVYADTFAVDG 184
           K+FHVR    GDV RA  +++ R++   +A +G
Sbjct: 460 KLFHVRSVTQGDVIRADAKDIPRIFQILYANEG 492


>SB_43958| Best HMM Match : Peptidase_M50 (HMM E-Value=5)
          Length = 145

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 49  NLLYGILIFLMILVFLNIALTLWIISALK 77
           N L+ + I L+I++ LNI +T+W ++  K
Sbjct: 112 NNLFMLSIDLLIVIALNIIITIWFVACSK 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,557,165
Number of Sequences: 59808
Number of extensions: 368789
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 3
length of query: 311
length of database: 16,821,457
effective HSP length: 82
effective length of query: 229
effective length of database: 11,917,201
effective search space: 2729039029
effective search space used: 2729039029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)