GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000920-TA|BGIBMGA000920-PA|IPR006875|Sarcoglycan complex
subunit protein
         (311 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    25   2.7  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    23   8.3  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           23   8.3  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   8.3  

>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 129  LVSDPKHSEHSKLLIKRDNIEFSGKMFHVRDSRGGDVFRASKEEVRVYADT--FAVDGIG 186
            L  D     H+K  ++R   + S K F  R     + F      +   A     A+ G G
Sbjct: 3151 LADDSSGENHNKHRLQRSRAQ-SRKTFRNRRGMRSNNFSEPSYAIPTVAGGAGLAMVGAG 3209

Query: 187  GLVVKTALQVPLVRAPPGSDLQLESLTRGLDLRAP 221
            G     A  VP V   PGS L   + + G     P
Sbjct: 3210 GSTAPGAGGVPGVAVVPGSGLPAAAASGGAPSAMP 3244


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 50  LLYGILIFLMILVFLNIALTLWIIS 74
           LL   L+F MILV L++ +T+ I++
Sbjct: 314 LLGKYLLFTMILVGLSVVITIIILN 338


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 123 HRNFTVLVSDPKHSEHSKLLIKRDNIEFSGKMFHVRDSRGGDVFRAS 169
           H N T   +DP+ + H   +I+R N +    M H    RGG    A+
Sbjct: 395 HNNRTTQFTDPRINMHILQMIRRQNSD----MLH--GPRGGSAIAAT 435


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 20  GNAPTVNVGNENRTNHKCLPAI 41
           GN     VGN NRT  +CL  I
Sbjct: 834 GNVDPNAVGNCNRTTGECLKCI 855


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,166
Number of Sequences: 2123
Number of extensions: 10754
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 4
length of query: 311
length of database: 516,269
effective HSP length: 64
effective length of query: 247
effective length of database: 380,397
effective search space: 93958059
effective search space used: 93958059
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)