GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000920-TA|BGIBMGA000920-PA|IPR006875|Sarcoglycan complex
subunit protein
         (311 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL030994-1|CAA19736.1|  404|Drosophila melanogaster EG:4F1.1 pro...   198   1e-50
AF277393-1|AAG17402.1|  404|Drosophila melanogaster gamma/delta-...   198   1e-50
AE014298-251|AAF45663.1|  404|Drosophila melanogaster CG14808-PA...   198   1e-50
AY058279-1|AAL13508.1| 1148|Drosophila melanogaster GH03118p pro...    29   8.2  
AY047577-1|AAK77309.1|  357|Drosophila melanogaster GH08848p pro...    29   8.2  
AF215861-1|AAF32288.1|  534|Drosophila melanogaster Myt1 kinase-...    29   8.2  
AE014296-1005|AAF50747.3|  533|Drosophila melanogaster CG32417-P...    29   8.2  
AE013599-3458|AAF46895.4| 2964|Drosophila melanogaster CG30092-P...    29   8.2  

>AL030994-1|CAA19736.1|  404|Drosophila melanogaster EG:4F1.1
           protein.
          Length = 404

 Score =  198 bits (482), Expect = 1e-50
 Identities = 95/251 (37%), Positives = 154/251 (61%), Gaps = 2/251 (0%)

Query: 45  GWRRNLLYGILIFLMILVFLNIALTLWIISALKLNMNGIGPIKIMNGGIQLQGQTWVVNN 104
           GWR+  LY +L+ LM+L+  N+ LTLWI+  ++ +  G+G +KI+ GGIQL GQ  +++ 
Sbjct: 138 GWRKKCLYTLLLLLMLLIITNLVLTLWILKVMEFSTEGMGQLKIVPGGIQLSGQAIIMDM 197

Query: 105 LVASTISTQPAHPITLHSHRNFTVLVSDPKHSEHSKLLIKRDNIEFSGKMFHVRDSRGGD 164
           L ASTI ++   PI++ S RNF++   DP     + L +  D  E     F + D+ G  
Sbjct: 198 LRASTIRSRHGQPISIESSRNFSINTRDPNGMIENHLFLGHDKFECLSAGFRINDTNGRS 257

Query: 165 VFRASKEEVRVYADTFAVDGIGGLVVKTALQVPLVRAPPGSDLQLESLTRGLDLRAPQSI 224
           +F  +++EV + A    +DG GG V + ++Q P VRA PG +L+LES TR L++ A + I
Sbjct: 258 LFSVNRDEVTIGAHALRIDGEGGAVFRESVQTPHVRAEPGRELRLESPTRQLEMTAAKDI 317

Query: 225 YFESRAGKIDVTSHTDLKLNSIVGAIKIDAPNIVITNLKEAH--VTEKPQRGIRSMKVYQ 282
             +SRAG I+V +  D+K  ++ G++++++  I++ NL+ A   +    Q      +V+Q
Sbjct: 318 NLQSRAGGIEVVALEDVKFRALDGSLRLESSKILMPNLRTAQPPILGTAQSRDHMHRVFQ 377

Query: 283 LCACATGKLFL 293
           LCAC+ GKLFL
Sbjct: 378 LCACSNGKLFL 388


>AF277393-1|AAG17402.1|  404|Drosophila melanogaster
           gamma/delta-sarcoglycan-like proteinSCG-GAMMA/DELTA
           protein.
          Length = 404

 Score =  198 bits (482), Expect = 1e-50
 Identities = 95/251 (37%), Positives = 154/251 (61%), Gaps = 2/251 (0%)

Query: 45  GWRRNLLYGILIFLMILVFLNIALTLWIISALKLNMNGIGPIKIMNGGIQLQGQTWVVNN 104
           GWR+  LY +L+ LM+L+  N+ LTLWI+  ++ +  G+G +KI+ GGIQL GQ  +++ 
Sbjct: 138 GWRKKCLYTLLLLLMLLIITNLVLTLWILKVMEFSTEGMGQLKIVPGGIQLSGQAIIMDM 197

Query: 105 LVASTISTQPAHPITLHSHRNFTVLVSDPKHSEHSKLLIKRDNIEFSGKMFHVRDSRGGD 164
           L ASTI ++   PI++ S RNF++   DP     + L +  D  E     F + D+ G  
Sbjct: 198 LRASTIRSRHGQPISIESSRNFSINTRDPNGMIENHLFLGHDKFECLSAGFRINDTNGRS 257

Query: 165 VFRASKEEVRVYADTFAVDGIGGLVVKTALQVPLVRAPPGSDLQLESLTRGLDLRAPQSI 224
           +F  +++EV + A    +DG GG V + ++Q P VRA PG +L+LES TR L++ A + I
Sbjct: 258 LFSVNRDEVTIGAHALRIDGEGGAVFRESVQTPHVRAEPGRELRLESPTRQLEMTAAKDI 317

Query: 225 YFESRAGKIDVTSHTDLKLNSIVGAIKIDAPNIVITNLKEAH--VTEKPQRGIRSMKVYQ 282
             +SRAG I+V +  D+K  ++ G++++++  I++ NL+ A   +    Q      +V+Q
Sbjct: 318 NLQSRAGGIEVVALEDVKFRALDGSLRLESSKILMPNLRTAQPPILGTAQSRDHMHRVFQ 377

Query: 283 LCACATGKLFL 293
           LCAC+ GKLFL
Sbjct: 378 LCACSNGKLFL 388


>AE014298-251|AAF45663.1|  404|Drosophila melanogaster CG14808-PA
           protein.
          Length = 404

 Score =  198 bits (482), Expect = 1e-50
 Identities = 95/251 (37%), Positives = 154/251 (61%), Gaps = 2/251 (0%)

Query: 45  GWRRNLLYGILIFLMILVFLNIALTLWIISALKLNMNGIGPIKIMNGGIQLQGQTWVVNN 104
           GWR+  LY +L+ LM+L+  N+ LTLWI+  ++ +  G+G +KI+ GGIQL GQ  +++ 
Sbjct: 138 GWRKKCLYTLLLLLMLLIITNLVLTLWILKVMEFSTEGMGQLKIVPGGIQLSGQAIIMDM 197

Query: 105 LVASTISTQPAHPITLHSHRNFTVLVSDPKHSEHSKLLIKRDNIEFSGKMFHVRDSRGGD 164
           L ASTI ++   PI++ S RNF++   DP     + L +  D  E     F + D+ G  
Sbjct: 198 LRASTIRSRHGQPISIESSRNFSINTRDPNGMIENHLFLGHDKFECLSAGFRINDTNGRS 257

Query: 165 VFRASKEEVRVYADTFAVDGIGGLVVKTALQVPLVRAPPGSDLQLESLTRGLDLRAPQSI 224
           +F  +++EV + A    +DG GG V + ++Q P VRA PG +L+LES TR L++ A + I
Sbjct: 258 LFSVNRDEVTIGAHALRIDGEGGAVFRESVQTPHVRAEPGRELRLESPTRQLEMTAAKDI 317

Query: 225 YFESRAGKIDVTSHTDLKLNSIVGAIKIDAPNIVITNLKEAH--VTEKPQRGIRSMKVYQ 282
             +SRAG I+V +  D+K  ++ G++++++  I++ NL+ A   +    Q      +V+Q
Sbjct: 318 NLQSRAGGIEVVALEDVKFRALDGSLRLESSKILMPNLRTAQPPILGTAQSRDHMHRVFQ 377

Query: 283 LCACATGKLFL 293
           LCAC+ GKLFL
Sbjct: 378 LCACSNGKLFL 388


>AY058279-1|AAL13508.1| 1148|Drosophila melanogaster GH03118p
           protein.
          Length = 1148

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 78  LNMNGIGPIKIMNGGIQLQGQTWVVNNLVASTISTQPA--HPITLHSHRNFTVLVSDPKH 135
           +N  G   I++++    L G  +   +  +S +STQ     P+ LHS  +FTV   +   
Sbjct: 539 INKPGQCVIEVLHQSKPLPGSPFTCESFDSSKVSTQGVTKEPLALHSPNSFTVRTDNAGT 598

Query: 136 SEHSKLLIKRDN 147
           +E     I   N
Sbjct: 599 AELEAFAISPSN 610


>AY047577-1|AAK77309.1|  357|Drosophila melanogaster GH08848p
           protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 46  WRRNLLYGILIFLMILVFLNIALTLWIISALKLNMNGIGPIKIMNGGI--------QLQG 97
           W R   +    F  +L FL +      I+A + N+N I P    + G+        QL G
Sbjct: 203 WGRMCNWKTAAFRYLLYFLEVLHLCKPITASQPNIN-IVPSSPSSKGVPLVPQVEFQLVG 261

Query: 98  QTWVVNNLVASTISTQPAHPITLHSHRNFTVLVSDPKHSEH--SKLLIKRDNIEFSGKMF 155
            T + N    ++       P+ L +  +  V+ S P ++    S+L + ++N++  G+  
Sbjct: 262 STPIANRDCYASDFLSGEDPLDLSNQGSPNVINSTPLNTNQGKSRLDLLKNNVDSMGRYV 321

Query: 156 HVRD 159
           HV D
Sbjct: 322 HVHD 325


>AF215861-1|AAF32288.1|  534|Drosophila melanogaster Myt1
           kinase-like protein protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 46  WRRNLLYGILIFLMILVFLNIALTLWIISALKLNMNGIGPIKIMNGGI--------QLQG 97
           W R   +    F  +L FL +      I+A + N+N I P    + G+        QL G
Sbjct: 379 WGRMCNWKTAAFRYLLYFLEVLHLCKPITASQPNIN-IVPSSPSSKGVPLVPQVEFQLVG 437

Query: 98  QTWVVNNLVASTISTQPAHPITLHSHRNFTVLVSDPKHSEH--SKLLIKRDNIEFSGKMF 155
            T + N    ++       P+ L +  +  V+ S P ++    S+L + ++N++  G+  
Sbjct: 438 STPIANRDCYASDFLSGEDPLDLSNQGSPNVINSTPLNTNQGKSRLDLLKNNVDSMGRYV 497

Query: 156 HVRD 159
           HV D
Sbjct: 498 HVHD 501


>AE014296-1005|AAF50747.3|  533|Drosophila melanogaster CG32417-PA
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 46  WRRNLLYGILIFLMILVFLNIALTLWIISALKLNMNGIGPIKIMNGGI--------QLQG 97
           W R   +    F  +L FL +      I+A + N+N I P    + G+        QL G
Sbjct: 379 WGRMCNWKTAAFRYLLYFLEVLHLCKPITASQPNIN-IVPSSPSSKGVPLVPQVEFQLVG 437

Query: 98  QTWVVNNLVASTISTQPAHPITLHSHRNFTVLVSDPKHSEH--SKLLIKRDNIEFSGKMF 155
            T + N    ++       P+ L +  +  V+ S P ++    S+L + ++N++  G+  
Sbjct: 438 STPIANRDCYASDFLSGEDPLDLSNQGSPNVINSTPLNTNQGKSRLDLLKNNVDSMGRYV 497

Query: 156 HVRD 159
           HV D
Sbjct: 498 HVHD 501


>AE013599-3458|AAF46895.4| 2964|Drosophila melanogaster CG30092-PD,
            isoform D protein.
          Length = 2964

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 78   LNMNGIGPIKIMNGGIQLQGQTWVVNNLVASTISTQPA--HPITLHSHRNFTVLVSDPKH 135
            +N  G   I++++    L G  +   +  +S +STQ     P+ LHS  +FTV   +   
Sbjct: 2355 INKPGQCVIEVLHQSKPLPGSPFTCESFDSSKVSTQGVTKEPLALHSPNSFTVRTDNAGT 2414

Query: 136  SEHSKLLIKRDN 147
            +E     I   N
Sbjct: 2415 AELEAFAISPSN 2426


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,244,080
Number of Sequences: 52641
Number of extensions: 567070
Number of successful extensions: 1230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1224
Number of HSP's gapped (non-prelim): 9
length of query: 311
length of database: 24,830,863
effective HSP length: 85
effective length of query: 226
effective length of database: 20,356,378
effective search space: 4600541428
effective search space used: 4600541428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)