GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000920-TA|BGIBMGA000920-PA|IPR006875|Sarcoglycan complex
subunit protein
         (311 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68314-8|CAA92663.1|  334|Caenorhabditis elegans Hypothetical pr...   122   4e-28
AF099925-13|AAC69503.2|  287|Caenorhabditis elegans Hypothetical...    35   0.085
Z48716-6|CAH04739.1|  238|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z48716-5|CAA88598.2|  264|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    30   2.4  
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    30   2.4  
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    30   2.4  
Z81075-5|CAJ85746.1|  154|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    29   3.2  
AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans Na/Ca,K-excha...    29   3.2  
AL110479-8|CAB60316.2|  337|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z69384-2|CAD89746.1|  521|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z69384-1|CAA93416.1|  520|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>Z68314-8|CAA92663.1|  334|Caenorhabditis elegans Hypothetical
           protein F07H5.2 protein.
          Length = 334

 Score =  122 bits (293), Expect = 4e-28
 Identities = 76/250 (30%), Positives = 125/250 (50%), Gaps = 9/250 (3%)

Query: 45  GWRRNLLYGILIFLMILVFLNIALTLWIISALKLNMNGIGPIKIMNGGIQLQGQTWVVNN 104
           GWR+  LY  ++ L I + LN++LT WI+S L  + +GIG +KI + GI+++G+      
Sbjct: 77  GWRKRFLYTFILILAIGIVLNLSLTFWIMSVLDFSPDGIGTLKIEDDGIRVEGRAQFDRP 136

Query: 105 LVASTISTQPAHPITLHSHRNFTVLVSDPKHSEHSKL-LIKRDNIEFSGKMFHVRDSRGG 163
           +  S +ST     +T+ S R   +    P     SK  L+     + +   F V D    
Sbjct: 137 VHFSQLSTLDEETLTVDSFRGVNLQARKPNGDVASKFSLMPEGKAQMTCDRFEVFDEDQK 196

Query: 164 DVFRASKEEVRVYADTFAVDGIGGLVVKTALQVPLVRAPPGSDLQLESLTRGLDLRAPQS 223
            +F A  +E+ +  +   +   GG V + A+Q   VR  P S L+LES TR + + A Q 
Sbjct: 197 LLFFADSDEIGLKLENLRILEDGGSVFEGAIQTSSVRPQPDSPLRLESPTRSVSVDAAQD 256

Query: 224 IYFESRAGKIDVTSHTDLKLNSIVGAIKIDAPNIVITNLKEAHVTEKPQRGIRSMKVYQL 283
           I   + AG++ V S  D+ ++S  G I++++ +I +  L  +     PQ         Q+
Sbjct: 257 IEILAAAGEVSVNSLLDISISSKQGEIRLESSSIYMEKLARSDGRGSPQT--------QV 308

Query: 284 CACATGKLFL 293
           C C  G+LFL
Sbjct: 309 CVCHNGRLFL 318


>AF099925-13|AAC69503.2|  287|Caenorhabditis elegans Hypothetical
          protein K01A2.1 protein.
          Length = 287

 Score = 34.7 bits (76), Expect = 0.085
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 55 LIFLMILVFLNIALTLWIISALKLNMNGI 83
          L  L I+  + +AL +WIIS L++N NG+
Sbjct: 36 LFVLFIISLITLALNIWIISTLRMNSNGV 64


>Z48716-6|CAH04739.1|  238|Caenorhabditis elegans Hypothetical
           protein F59B10.4b protein.
          Length = 238

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 247 VGAIKIDAPNIVITNLKEAHVTEKPQRGIRSMKVYQ 282
           +G I +DA  +  T+L+EAHV++  ++  RSM V++
Sbjct: 87  LGCISVDAYQVPATDLEEAHVSQPQEQPHRSMMVWK 122


>Z48716-5|CAA88598.2|  264|Caenorhabditis elegans Hypothetical
           protein F59B10.4a protein.
          Length = 264

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 247 VGAIKIDAPNIVITNLKEAHVTEKPQRGIRSMKVYQ 282
           +G I +DA  +  T+L+EAHV++  ++  RSM V++
Sbjct: 113 LGCISVDAYQVPATDLEEAHVSQPQEQPHRSMMVWK 148


>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/68 (29%), Positives = 29/68 (42%)

Query: 113 QPAHPITLHSHRNFTVLVSDPKHSEHSKLLIKRDNIEFSGKMFHVRDSRGGDVFRASKEE 172
           +P   +T       T + S   H E     +  DN+ F+ K   V+D R G V   SK++
Sbjct: 239 KPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQD 298

Query: 173 VRVYADTF 180
               A TF
Sbjct: 299 PAKEARTF 306


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/68 (29%), Positives = 29/68 (42%)

Query: 113 QPAHPITLHSHRNFTVLVSDPKHSEHSKLLIKRDNIEFSGKMFHVRDSRGGDVFRASKEE 172
           +P   +T       T + S   H E     +  DN+ F+ K   V+D R G V   SK++
Sbjct: 273 KPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQD 332

Query: 173 VRVYADTF 180
               A TF
Sbjct: 333 PAKEARTF 340


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/68 (29%), Positives = 29/68 (42%)

Query: 113 QPAHPITLHSHRNFTVLVSDPKHSEHSKLLIKRDNIEFSGKMFHVRDSRGGDVFRASKEE 172
           +P   +T       T + S   H E     +  DN+ F+ K   V+D R G V   SK++
Sbjct: 273 KPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQD 332

Query: 173 VRVYADTF 180
               A TF
Sbjct: 333 PAKEARTF 340


>Z81075-5|CAJ85746.1|  154|Caenorhabditis elegans Hypothetical
           protein F35C12.2b protein.
          Length = 154

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 40  AIFFRGWRRNLLYGILIFLMILVFLNIALTL 70
           AIF  GW+ N ++GIL+ +  + F   +++L
Sbjct: 111 AIFLSGWKMNKIFGILMIVSYVFFCVFSVSL 141


>Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical
           protein F35C12.2a protein.
          Length = 596

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 40  AIFFRGWRRNLLYGILIFLMILVFLNIALTL 70
           AIF  GW+ N ++GIL+ +  + F   +++L
Sbjct: 553 AIFLSGWKMNKIFGILMIVSYVFFCVFSVSL 583


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y116F11B.3 protein.
          Length = 1042

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 84  GPIKIMNGGIQLQGQTWVVNNLVASTISTQP-AHPITLHSHRNF--TVLVSDPKHSEHSK 140
           GP  +M GG + +G++WV+N  +   IS Q     + L  HR +  +++ ++   +  S 
Sbjct: 580 GPNFLMIGGQEAEGESWVLNEKLPWLISAQKYGATVYLLEHRFYGDSLVGNNTNLNLLSS 639

Query: 141 LLIKRDNIEF 150
           L +  D+ EF
Sbjct: 640 LQVLYDSAEF 649


>AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans
           Na/Ca,K-exchanger protein.
          Length = 596

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 40  AIFFRGWRRNLLYGILIFLMILVFLNIALTL 70
           AIF  GW+ N ++GIL+ +  + F   +++L
Sbjct: 553 AIFLSGWKMNKIFGILMIVSYVFFCVFSVSL 583


>AL110479-8|CAB60316.2|  337|Caenorhabditis elegans Hypothetical
           protein Y105C5B.10 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 16  STPTGNAPTVNVGNENRTNHKCLPAIFFRGWRRNLLYGILIFLMILVFLNIALTLWI--I 73
           ST    A +V+V   NR +    P  F R W+ + L+ I I +  L+ L I L+ ++  +
Sbjct: 116 STGICQAMSVSVLASNRLSVMLFPTSFNRIWQEHRLW-IAISIQYLIGLIIGLSTFLNDV 174

Query: 74  SALKLNMNGIGP 85
              + + NGI P
Sbjct: 175 QLFRNSKNGIVP 186


>Z69384-2|CAD89746.1|  521|Caenorhabditis elegans Hypothetical
           protein T11G6.1b protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 146 DNIEFSGKMFHVRDSRGGDVFRASKEEVRVYADTFAVDGI 185
           +N+E   KM  + D    D F+   EE++V  +   VDG+
Sbjct: 288 NNLELLEKMSQLPDLGQNDKFKKGAEELKVLIEYLNVDGV 327


>Z69384-1|CAA93416.1|  520|Caenorhabditis elegans Hypothetical
           protein T11G6.1a protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 146 DNIEFSGKMFHVRDSRGGDVFRASKEEVRVYADTFAVDGI 185
           +N+E   KM  + D    D F+   EE++V  +   VDG+
Sbjct: 287 NNLELLEKMSQLPDLGQNDKFKKGAEELKVLIEYLNVDGV 326


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,093,535
Number of Sequences: 27539
Number of extensions: 278999
Number of successful extensions: 635
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 14
length of query: 311
length of database: 12,573,161
effective HSP length: 81
effective length of query: 230
effective length of database: 10,342,502
effective search space: 2378775460
effective search space used: 2378775460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)