GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000920-TA|BGIBMGA000920-PA|IPR006875|Sarcoglycan complex
subunit protein
         (311 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.9  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 50  LLYGILIFLMILVFLNIALTLWIIS 74
           LL   L+F MILV L++ +T+ I++
Sbjct: 297 LLGKYLLFTMILVGLSVVITIVILN 321


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 50  LLYGILIFLMILVFLNIALTLWIIS 74
           LL   LIF MILV ++I +T+ +++
Sbjct: 306 LLGKYLIFAMILVSISICVTVVVLN 330


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 50  LLYGILIFLMILVFLNIALTLWIIS 74
           LL   LIF MILV ++I +T+ +++
Sbjct: 306 LLGKYLIFAMILVSISICVTVVVLN 330


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 50  LLYGILIFLMILVFLNIALTLWIIS 74
           LL   L+F M+LV L++ +T+ +++
Sbjct: 298 LLGKYLLFTMVLVTLSVVVTIAVLN 322


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 50  LLYGILIFLMILVFLNIALTLWIIS 74
           LL   L+F MILV L+I +T+ +++
Sbjct: 311 LLGKYLLFTMILVTLSIWITVCVLN 335


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 11  IRGWGSTPTGNAPTVNVGNENRTN 34
           I G G++ +G+A  ++ G+ N+T+
Sbjct: 595 INGSGASGSGSAENLSSGSNNQTS 618


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 240 DLKLNSIVGAIKIDAPNIVITNLK 263
           D K+  IV   KID PNI I  ++
Sbjct: 243 DAKVPIIVAINKIDKPNIDIIKVQ 266


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,825
Number of Sequences: 429
Number of extensions: 3038
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 311
length of database: 140,377
effective HSP length: 58
effective length of query: 253
effective length of database: 115,495
effective search space: 29220235
effective search space used: 29220235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)