GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000918-TA|BGIBMGA000918-PA|IPR001232|SKP1 component
         (162 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    25   0.31 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    24   0.72 
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   1.7  
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    22   2.9  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    20   8.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    20   8.9  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 131 PEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
           PE  R    I  DFTA++ D+  +   W E+
Sbjct: 170 PEGSRTPIEIPQDFTASDLDEEHRVAYWRED 200


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 0.72
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 127 KGKTPEEIRKTFNIKNDF 144
           K + PE ++K +NI+N+F
Sbjct: 48  KVQVPEALKKIYNIQNNF 65


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 89  ADFLKVDQGTLFELI 103
           ADF ++D+GT F ++
Sbjct: 280 ADFFEIDRGTFFGIL 294


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 119 CKTVANMIKGKTPEEIRK 136
           C  + N IKG  PE I K
Sbjct: 45  CDALGNQIKGALPEIIGK 62


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 91  FLKVDQGTLFEL 102
           FL +D GTL+ L
Sbjct: 366 FLNIDYGTLYSL 377


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 62  TYHKDDPPLPEDDE 75
           +Y  + PP P+DDE
Sbjct: 91  SYAANCPPSPKDDE 104


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,303
Number of Sequences: 317
Number of extensions: 1388
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 162
length of database: 114,650
effective HSP length: 52
effective length of query: 110
effective length of database: 98,166
effective search space: 10798260
effective search space used: 10798260
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)