GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000918-TA|BGIBMGA000918-PA|IPR001232|SKP1 component
         (162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...   176   2e-45
SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual      32   0.036
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    30   0.19 
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    27   1.0  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   1.0  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   4.2  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    25   7.3  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.3  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   7.3  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    24   9.6  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    24   9.6  
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    24   9.6  

>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score =  176 bits (428), Expect = 2e-45
 Identities = 88/164 (53%), Positives = 113/164 (68%), Gaps = 5/164 (3%)

Query: 1   MPNIKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQW 60
           M  IKL SSDNE FVVD  IA+ S+ IK                PLPNV+S +L+KV++W
Sbjct: 1   MSKIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPI---PLPNVSSNVLRKVLEW 57

Query: 61  ATYHKDD--PPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVT 118
             +HK+D      E+ + + K++ DI  WD  F+ VDQ  LFE++LA+NYLDIK LLD  
Sbjct: 58  CEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTG 117

Query: 119 CKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
           CKTVANMI+GK+PE+IRKTFNI NDFT  EE+Q+RKENEW E++
Sbjct: 118 CKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWAEDR 161


>SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 97

 Score = 32.3 bits (70), Expect = 0.036
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 4  IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
          ++L S D  VF+++ EIA  S TI+                  P++ + +L+KV ++  Y
Sbjct: 6  VRLISGDGFVFILEKEIACLSGTIRAILNEGIFSEAQKNECTFPDIRATLLEKVCEYLHY 65

Query: 64 ---HKDDPPLPEDD 74
             +K+   +P+ D
Sbjct: 66 NYRYKNQLDIPKFD 79


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
          protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 29.9 bits (64), Expect = 0.19
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 69 PLPEDDENKEKRTDDISSWDADFLKVDQGT 98
          P+P  D NK   T D+SSW+ D+  +  G+
Sbjct: 9  PIPRSDSNK---TSDVSSWEEDYELISLGS 35


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 115 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQV 152
           L VT KTV   + G TP+  R+  N+  D +   +  V
Sbjct: 96  LQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSHV 133


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 69  PLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILA-ANYLDIKGLLDVTCKTVA 123
           P  +DD N +  +DD S+ D    ++D   L E +L   N    + L D+T  T+A
Sbjct: 207 PEADDDSNDDMYSDDDSNADRWASRIDTAALKEEVLKYMNRCSTQDLADMTGCTLA 262


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 46  LPNVNSAILKKVIQWATYHKDDPPLPEDDENKEK 79
           L N N  +   V+Q A    DDP L E+ +  EK
Sbjct: 106 LSNSNKNLQAAVLQMAVSDTDDPRLKEEYKQTEK 139


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 55  KKVIQWATYHKDDPPLPEDDENKEKR 80
           K+ IQ     K +PP PE+ E KE +
Sbjct: 92  KETIQPPEEVKTEPPQPEEKEGKEAK 117


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 116 DVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
           D+  KT     + +  +    +FN   D TA ++ Q+R+++   EE
Sbjct: 59  DLRSKTKELKAENEKEDTFLNSFNASGDLTANKKIQLREQSRKLEE 104


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 46  LPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILA 105
           + +V S  L  +    T+ +    L E  EN+ +    +S+W     +V       LILA
Sbjct: 15  IKDVESEFLTSIPNGLTHEEAQNRLSEYGENRLEADSGVSAWKVLLRQVLNAMCVVLILA 74

Query: 106 A 106
           A
Sbjct: 75  A 75


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 137  TFNIKNDFTAAEEDQVRKENEWCE 160
            T ++ N FT A  D+  KEN   E
Sbjct: 1200 TPSVNNSFTTANNDECSKENSQIE 1223


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 58  IQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQG 97
           IQW     DD P  + D ++E+  ++    + +F +  +G
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEADEMEEEFDEEGEG 196


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 7/31 (22%), Positives = 20/31 (64%)

Query: 132 EEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
           ++++K +   N++  +E  Q+R E + C+++
Sbjct: 55  DKVKKNYGFLNEYRVSEIQQLRDELKICKDQ 85


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,901
Number of Sequences: 5004
Number of extensions: 29306
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 12
length of query: 162
length of database: 2,362,478
effective HSP length: 68
effective length of query: 94
effective length of database: 2,022,206
effective search space: 190087364
effective search space used: 190087364
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)