Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000918-TA|BGIBMGA000918-PA|IPR001232|SKP1 component
(162 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16009| Best HMM Match : Skp1 (HMM E-Value=1.1e-13) 164 4e-41
SB_51239| Best HMM Match : tRNA_m1G_MT (HMM E-Value=7.1) 28 3.2
SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72) 28 3.2
SB_44640| Best HMM Match : LIM (HMM E-Value=0.44) 28 3.2
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18) 28 4.3
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09) 27 5.6
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_7270| Best HMM Match : IL17 (HMM E-Value=0.0012) 27 7.5
SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06) 27 9.9
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_16009| Best HMM Match : Skp1 (HMM E-Value=1.1e-13)
Length = 93
Score = 164 bits (398), Expect = 4e-41
Identities = 75/83 (90%), Positives = 78/83 (93%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 104
PLPNVN+AILKKVIQWAT HKDDPP P+DDENKEKRTDDI WD +FLKVDQGTLFELIL
Sbjct: 10 PLPNVNAAILKKVIQWATRHKDDPPPPDDDENKEKRTDDIEPWDQEFLKVDQGTLFELIL 69
Query: 105 AANYLDIKGLLDVTCKTVANMIK 127
AANYLDIKGLLDVTCKTVANMIK
Sbjct: 70 AANYLDIKGLLDVTCKTVANMIK 92
>SB_51239| Best HMM Match : tRNA_m1G_MT (HMM E-Value=7.1)
Length = 471
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 46 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 98
L +++ I +K ++ Y + + PLPE + E+R + S+ ADFL+ ++GT
Sbjct: 210 LEGIDAGIWEKGREYLVYVRYELRPLPEQNARGERRLRCVVSYVADFLR-NRGT 262
>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
Length = 1161
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 46 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 98
L +++ I +K ++ Y + + PLPE +E + + + S+ ADFL++ +GT
Sbjct: 184 LEGIDAGIWEKGREYLVYVRYELRPLPEQNEGSDAFANCVVSYVADFLRI-RGT 236
>SB_44640| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 788
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 46 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 98
L +++ I +K ++ Y + + PLPE + E+R + S+ ADFL+ ++GT
Sbjct: 210 LEGIDAGIWEKGREYLVYVRYELRPLPEQNARGERRLRCVVSYVADFLR-NRGT 262
>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1175
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 46 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 98
L +++ I +K ++ Y + + PLPE +E + + + S+ ADFL++ +GT
Sbjct: 905 LEGIDAGIWEKGREYLVYVRYELRPLPEQNEGSDAFANCVVSYVADFLRI-RGT 957
>SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18)
Length = 656
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKE 78
P PN++S +K+ +H+ PP ++DE ++
Sbjct: 473 PGPNIHSLSVKRKCSKLEHHEGTPPADDEDEEQK 506
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 65 KDDPPLPEDDENKEKRTDDISSWDADF 91
K D PL E D+ K KR + WD F
Sbjct: 1774 KKDNPLEEVDDRKLKRAQEEKEWDEAF 1800
>SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09)
Length = 1296
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 46 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 98
L +++ I +K ++ Y + + PLPE +E + + + S+ ADFL+ ++GT
Sbjct: 551 LEGIDAGIWEKGREYLVYVRYELRPLPEQNEGSDAFANCVVSYVADFLR-NRGT 603
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 63 YHKDDPPLPEDDENKEKRTDDIS 85
++K+D P +DD+ E+ TDD S
Sbjct: 703 HNKEDKPQEKDDDKSEEETDDES 725
>SB_7270| Best HMM Match : IL17 (HMM E-Value=0.0012)
Length = 166
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 99 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKND 143
LF ++L + + GL +TCK + ++ P +RK N+ ND
Sbjct: 12 LFLVVLWSPQTESCGLRPLTCKVLRHLSDDYVPILLRKKPNLAND 56
>SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)
Length = 353
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 130 TPEEIRKTFNIK--NDFTAAEEDQVRKENE 157
T +E+R TFNIK N F A E++ + E
Sbjct: 297 TEKEVRNTFNIKLRNRFQALEQEDEEERGE 326
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 109 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEED 150
++ K D + + IKG TPEEIR + D +ED
Sbjct: 447 VNTKSSWDASMMAMRRRIKGLTPEEIRNLPKEELDLPVNQED 488
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,447,200
Number of Sequences: 59808
Number of extensions: 213864
Number of successful extensions: 584
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 12
length of query: 162
length of database: 16,821,457
effective HSP length: 77
effective length of query: 85
effective length of database: 12,216,241
effective search space: 1038380485
effective search space used: 1038380485
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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